Evidence map›Paper›PMID 26513361›Full record

ArticlePloS one2015

Mitogenomes from Egyptian Cattle Breeds: New Clues on the Origin of Haplogroup Q and the Early Spread of Bos taurus from the Near East.

Anna Olivieri, Francesca Gandini, Alessandro Achilli, Alessandro Fichera, Ermanno Rizzi, Silvia Bonfiglio, Vincenza Battaglia, Stefania Brandini, Anna De Gaetano, Ahmed El-Beltagi and 5 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Enamel-dentine junction morphology reveals population replacement and mobility in the late prehistoric Middle Nile Valley.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Anna OlivieriDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Francesca GandiniDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy; School of Applied Sciences, University of Huddersfield, Queensgate, Huddersfield, United Kingdom.
Alessandro AchilliDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy; Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Perugia, Italy.
Alessandro FicheraDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Ermanno RizziIstituto di Tecnologie Biomediche, Consiglio Nazionale delle Ricerche, Segrate (Milano), Italy; Fondazione Telethon, Milano, Italy.
Silvia BonfiglioDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Vincenza BattagliaDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Stefania BrandiniDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Anna De GaetanoDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Ahmed El-BeltagiAnimal Production Research Institute (APRI), Ministry of Agriculture, Cairo, Egypt.
Hovirag LancioniDipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Perugia, Italy.
Saif AghaDepartment of Animal Production, Faculty of Agriculture, Ain Shams University, Cairo, Egypt.
Ornella SeminoDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Luca FerrettiDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.
Antonio TorroniDipartimento di Biologia e Biotecnologie "L. Spallanzani", Università di Pavia, Pavia, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenetic studies support the scenario that Bos taurus domestication occurred in the Near East during the Neolithic transition about 10 thousand years (ky) ago, with the likely exception of a minor secondary event in Italy. However, despite the proven effectiveness of whole mitochondrial genome data in providing valuable information concerning the origin of taurine cattle, until now no population surveys have been carried out at the level of mitogenomes in local breeds from the Near East or surrounding areas. Egypt is in close geographic and cultural proximity to the Near East, in particular the Nile Delta region, and was one of the first neighboring areas to adopt the Neolithic package. Thus, a survey of mitogenome variation of autochthonous taurine breeds from the Nile Delta region might provide new insights on the early spread of cattle rearing outside the Near East. METHODOLOGY: Using Illumina high-throughput sequencing we characterized the mitogenomes from two cattle breeds, Menofi (N = 17) and Domiaty (N = 14), from the Nile Delta region. Phylogenetic and Bayesian analyses were subsequently performed.

conclusionsPhylogenetic analyses of the 31 mitogenomes confirmed the prevalence of haplogroup T1, similar to most African cattle breeds, but showed also high frequencies for haplogroups T2, T3 and Q1, and an extremely high haplotype diversity, while Bayesian skyline plots pointed to a main episode of population growth ~12.5 ky ago. Comparisons of Nile Delta mitogenomes with those from other geographic areas revealed that (i) most Egyptian mtDNAs are probably direct local derivatives from the founder domestic herds which first arrived from the Near East and the extent of gene flow from and towards the Nile Delta region was limited after the initial founding event(s); (ii) haplogroup Q1 was among these founders, thus proving that it underwent domestication in the Near East together with the founders of the T clades.

Indexed as

Genome, MitochondrialGenomicsAnimalsAnimals, DomesticBayes TheoremBreedingCattleEvolution, MolecularGenetics, PopulationGenetic VariationHaplotypesHigh-Throughput Nucleotide SequencingPhylogenyPhylogeography

Identifiers

PMID26513361
PMCPMC4626031

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.