Evidence map›Paper›PMID 26513360›Full record

ArticlePLoS computational biology2015

Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity.

Nidhi Tyagi, Edward J Farnell, Colin M Fitzsimmons, Stephanie Ryan, Edridah Tukahebwa, Rick M Maizels, David W Dunne, Janet M Thornton, Nicholas Furnham

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Effects of treating helminths during pregnancy and early childhood on risk of allergy-related outcomes: Follow-up of a randomized controlled trial.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2017
    Trial
  3. Review
  4. Review
  5. Article
  6. Allergen skin test reactivity and asthma are inversely associated with ratios of IgG4/IgE and total IgE/allergen-specific IgE in Ugandan communities.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2021
    Article
  7. Article
  8. Observational
  9. Article
  10. Animals : an open access journal from MDPI · 2020
    Article
  11. Review
  12. Review
  13. Do helminth infections underpin urban-rural differences in risk factors for allergy-related outcomes?Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. A life without worms.Transactions of the Royal Society of Tropical Medicine and Hygiene · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Nidhi TyagiThe EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Edward J FarnellDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Colin M FitzsimmonsDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Stephanie RyanInstitute of Immunology and Infection Research, University of Edinburgh, Edinburgh, United Kingdom.
Edridah TukahebwaVector Control Division, Ministry of Health, Kampala, Uganda.
Rick M MaizelsInstitute of Immunology and Infection Research, University of Edinburgh, Edinburgh, United Kingdom.
David W DunneDepartment of Pathology, University of Cambridge, Cambridge, United Kingdom.
Janet M ThorntonThe EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Nicholas FurnhamLondon School of Hygiene and Tropical Medicine, London, United Kingdom.
University of Cambridge · GBUniversity of Edinburgh · GBEuropean Bioinformatics Institute · GBLondon School of Hygiene & Tropical Medicine · GBMinistry of Health · UGWellcome Trust · GB

Funding

Medical Research Council MR/K020420/1Wellcome Trust 090281Wellcome Trust 094317Wellcome Trust 095831Wellcome Trust 106122Wellcome Trust WT 083931/Z/07/ZWellcome Trust WT094317MAWellcome Trust WT 094317/Z/10/Z
6 · The paper itself

Abstract

Allergic reactions can be considered as maladaptive IgE immune responses towards environmental antigens. Intriguingly, these mechanisms are observed to be very similar to those implicated in the acquisition of an important degree of immunity against metazoan parasites (helminths and arthropods) in mammalian hosts. Based on the hypothesis that IgE-mediated immune responses evolved in mammals to provide extra protection against metazoan parasites rather than to cause allergy, we predict that the environmental allergens will share key properties with the metazoan parasite antigens that are specifically targeted by IgE in infected human populations. We seek to test this prediction by examining if significant similarity exists between molecular features of allergens and helminth proteins that induce an IgE response in the human host. By employing various computational approaches, 2712 unique protein molecules that are known IgE antigens were searched against a dataset of proteins from helminths and parasitic arthropods, resulting in a comprehensive list of 2445 parasite proteins that show significant similarity through sequence and structure with allergenic proteins. Nearly half of these parasite proteins from 31 species fall within the 10 most abundant allergenic protein domain families (EF-hand, Tropomyosin, CAP, Profilin, Lipocalin, Trypsin-like serine protease, Cupin, BetV1, Expansin and Prolamin). We identified epitopic-like regions in 206 parasite proteins and present the first example of a plant protein (BetV1) that is the commonest allergen in pollen in a worm, and confirming it as the target of IgE in schistosomiasis infected humans. The identification of significant similarity, inclusive of the epitopic regions, between allergens and helminth proteins against which IgE is an observed marker of protective immunity explains the 'off-target' effects of the IgE-mediated immune system in allergy. All these findings can impact the discovery and design of molecules used in immunotherapy of allergic conditions.

Indexed as

AllergensAnimalsAntigens, HelminthEvolution, MolecularHelminth ProteinsHelminthsHumansHypersensitivityImmunity, InnateImmunoglobulin EAllergensAntigens, HelminthHelminth ProteinsImmunoglobulin E

Identifiers

PMID26513360
PMCPMC4626114
OpenAlexW1830667299

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.