ArticleProceedings of the National Academy of Sciences of the United States of America2015
A priori calculations of the free energy of formation from solution of polymorphic self-assembled monolayers.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed, 52 citations in OpenAlex.
- Anchoring Stealth Amine Biomarkers via Coupled Chemical Activation for Surface Immobilization.Langmuir : the ACS journal of surfaces and colloids · 2026Article
- Free energy calculations in molecular modeling: from classical methods to machine learning.Journal of molecular modeling · 2026Review
- Benchmarking Density Functional Theory Methods for Metalloenzyme Reactions: The Introduction of the MME55 Set.Journal of chemical theory and computation · 2023Article
- Spontaneous S-Si bonding of alkanethiols to Si(111)-H: towards Si-molecule-Si circuits.Chemical science · 2020Article
- Role of redox-active axial ligands of metal porphyrins adsorbed at solid-liquid interfaces in a liquid-STM setup.Beilstein journal of nanotechnology · 2020Article
- Self-Assembly of Covalently Linked Porphyrin Dimers at the Solid-Liquid Interface.Molecules (Basel, Switzerland) · 2019Article
- Faraday cage screening reveals intrinsic aspects of the van der Waals attraction.Proceedings of the National Academy of Sciences of the United States of America · 2018Article
- van der Waals forces control ferroelectric-antiferroelectric ordering in CuInPChemical science · 2018Article
Corrections and comments
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Authors and funding
14 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Modern quantum chemical electronic structure methods typically applied to localized chemical bonding are developed to predict atomic structures and free energies for meso-tetraalkylporphyrin self-assembled monolayer (SAM) polymorph formation from organic solution on highly ordered pyrolytic graphite surfaces. Large polymorph-dependent dispersion-induced substrate-molecule interactions (e.g., -100 kcal mol(-1) to -150 kcal mol(-1) for tetratrisdecylporphyrin) are found to drive SAM formation, opposed nearly completely by large polymorph-dependent dispersion-induced solvent interactions (70-110 kcal mol(-1)) and entropy effects (25-40 kcal mol(-1) at 298 K) favoring dissolution. Dielectric continuum models of the solvent are used, facilitating consideration of many possible SAM polymorphs, along with quantum mechanical/molecular mechanical and dispersion-corrected density functional theory calculations. These predict and interpret newly measured and existing high-resolution scanning tunnelling microscopy images of SAM structure, rationalizing polymorph formation conditions. A wide range of molecular condensed matter properties at room temperature now appear suitable for prediction and analysis using electronic structure calculations.
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