Evidence map›Paper›PMID 26512101›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1.

Patricia Karlsson, Michael Danger Christie, Danelle K Seymour, Huan Wang, Xi Wang, Jörg Hagmann, Franceli Kulcheski, Pablo Andrés Manavella

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. International journal of molecular sciences · 2026
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  8. Tweaking the Small Non-Coding RNAs to Improve Desirable Traits in Plant.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Patricia KarlssonMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Michael Danger ChristieMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Danelle K SeymourMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Huan WangMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Xi WangMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Jörg HagmannMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Franceli KulcheskiMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;
Pablo Andrés ManavellaMax Planck Institute for Developmental Biology, D-72076 Tübingen, Germany; Instituto de Agrobiotecnología del Litoral, Universidad Nacional del Litoral - Consejo Nacional de Investigaciones Científicas y Técnicas, 3000 Santa Fe, Argentina pablomanavella@ial.santafe-conicet.gov.ar.ORCID http://orcid.org/0000-0003-3589-4414

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The biogenesis of microRNAs (miRNAs), which regulate mRNA abundance through posttranscriptional silencing, comprises multiple well-orchestrated processing steps. We have identified the Arabidopsis thaliana K homology (KH) domain protein REGULATOR OF CBF GENE EXPRESSION 3 (RCF3) as a cofactor affecting miRNA biogenesis in specific plant tissues. MiRNA and miRNA-target levels were reduced in apex-enriched samples of rcf3 mutants, but not in other tissues. Mechanistically, RCF3 affects miRNA biogenesis through nuclear interactions with the phosphatases C-TERMINAL DOMAIN PHOSPHATASE-LIKE1 and 2 (CPL1 and CPL2). These interactions are essential to regulate the phosphorylation status, and thus the activity, of the double-stranded RNA binding protein and DICER-LIKE1 (DCL1) cofactor HYPONASTIC LEAVES1 (HYL1).

Indexed as

ArabidopsisArabidopsis ProteinsBase SequenceDNA PrimersLuciferasesMicroRNAsMolecular Sequence DataReverse Transcriptase Polymerase Chain ReactionRNA-Binding ProteinsSequence Analysis, DNATransgenesArabidopsis ProteinsDNA PrimersHYL1 protein, ArabidopsisLuciferasesMicroRNAsRCF3 protein, ArabidopsisRNA-Binding ProteinsArabidopsis thalianagene silencingHYL1micro RNA biogenesisphosphorylation

Identifiers

PMID26512101
PMCPMC4653147

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.