Evidence map›Paper›PMID 26510672›Full record

ArticleBiology letters2015

Mitogenomic analysis of a 50-generation chicken pedigree reveals a rapid rate of mitochondrial evolution and evidence for paternal mtDNA inheritance.

Michelle Alexander, Simon Y W Ho, Martyna Molak, Ross Barnett, Örjan Carlborg, Ben Dorshorst, Christa Honaker, Francois Besnier, Per Wahlberg, Keith Dobney and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Biology letters, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
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  9. Occasional paternal inheritance of the germline-restricted chromosome in songbirds.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
  11. Article
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  13. Article
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  15. Article
  16. Selfish Mitonuclear Conflict.Current biology : CB · 2019
    Review
  17. Paternal comeback in mitochondrial DNA inheritance.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 6 countries.

Michelle AlexanderBioArCh Biology S Block, University of York, Wentworth Way, Heslington, York YO10 5DD, UK Department of Archaeology, School of Geosciences, University of Aberdeen, St. Mary's, Elphinstone Road, AB24 3UF, UK.ORCID http://orcid.org/0000-0001-8000-3639
Simon Y W HoSchool of Biological Sciences, University of Sydney, Sydney, New South Wales 2006, Australia.ORCID http://orcid.org/0000-0002-0361-2307
Martyna MolakMuseum and Institute of Zoology, Polish Academy of Sciences, Warsaw 00-679, Poland.ORCID http://orcid.org/0000-0001-5068-8649
Ross BarnettPalaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK.
Örjan CarlborgDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, PO Box 7078, 75007 Uppsala, Sweden.
Ben DorshorstScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, PO Box 582, 75123 Uppsala, Sweden Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
Christa HonakerDepartment of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
Francois BesnierSection of Population Genetics, Institute of Marine Research, Nordnes 5817, Bergen, Norway.
Per WahlbergScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, PO Box 582, 75123 Uppsala, Sweden.
Keith DobneyDepartment of Archaeology, School of Geosciences, University of Aberdeen, St. Mary's, Elphinstone Road, AB24 3UF, UK.
Paul SiegelDepartment of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
Leif AnderssonScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, PO Box 582, 75123 Uppsala, Sweden Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, PO Box 7023, 75007 Uppsala, Sweden.
Greger LarsonPalaeogenomics and Bio-Archaeology Research Network, Research Laboratory for Archaeology, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK greger.larson@arch.ox.ac.uk.
Uppsala University · SEOxford Archaeology · GBUniversity of Aberdeen · GBVirginia Tech · USMuseum and Institute of Zoology · PLNorwegian Institute of Marine Research · NOSwedish University of Agricultural Sciences · SEThe University of Sydney · AU

Funding

European Research Council 337574
6 · The paper itself

Abstract

Mitochondrial genomes represent a valuable source of data for evolutionary research, but studies of their short-term evolution have typically been limited to invertebrates, humans and laboratory organisms. Here we present a detailed study of 12 mitochondrial genomes that span a total of 385 transmissions in a well-documented 50-generation pedigree in which two lineages of chickens were selected for low and high juvenile body weight. These data allowed us to test the hypothesis of time-dependent evolutionary rates and the assumption of strict maternal mitochondrial transmission, and to investigate the role of mitochondrial mutations in determining phenotype. The identification of a non-synonymous mutation in ND4L and a synonymous mutation in CYTB, both novel mutations in Gallus, allowed us to estimate a molecular rate of 3.13 × 10(-7) mutations/site/year (95% confidence interval 3.75 × 10(-8)-1.12 × 10(-6)). This is substantially higher than avian rate estimates based upon fossil calibrations. Ascertaining which of the two novel mutations was present in an additional 49 individuals also revealed an instance of paternal inheritance of mtDNA. Lastly, an association analysis demonstrated that neither of the point mutations was strongly associated with the phenotypic differences between the two selection lines. Together, these observations reveal the highly dynamic nature of mitochondrial evolution over short time periods.

Indexed as

Biological EvolutionAnimalsAnimals, NewbornBody WeightChickensDNA, MitochondrialFemaleGenome, MitochondrialMaleMitochondriaMutation RatePedigreeTime FactorsDNA, Mitochondrialassociation analysismitochondrial genomemutation ratespaternal leakagepedigree

Identifiers

PMID26510672
PMCPMC4650172
OpenAlexW1829637110

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.