Evidence map›Paper›PMID 26510639›Full record

ArticleBMC genomics2015

Prior infection with Type A Francisella tularensis antagonizes the pulmonary transcriptional response to an aerosolized Toll-like receptor 4 agonist.

Kathie-Anne Walters, Rachael Olsufka, Rolf E Kuestner, Xiagang Wu, Kai Wang, Shawn J Skerrett, Adrian Ozinsky

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Expression of DC-SIGN-like C-Type Lectin Receptors in Salmo salar.Developmental and comparative immunology · 2020
    Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kathie-Anne WaltersInstitute for Systems Biology, 401 Terry Ave. N, Seattle, WA, 98109, USA. Kathie.Walters@systemsbiology.org.
Rachael OlsufkaDivision of Pulmonary and Critical Care Medicine, University of Washington, Seattle, WA, 98104, USA. rachael.olsufka@uky.edu.
Rolf E KuestnerInstitute for Systems Biology, 401 Terry Ave. N, Seattle, WA, 98109, USA. Rolf.Kuestner@systemsbiology.org.
Xiagang WuInstitute for Systems Biology, 401 Terry Ave. N, Seattle, WA, 98109, USA. Xiagang.Wu@systemsbiology.org.
Kai WangInstitute for Systems Biology, 401 Terry Ave. N, Seattle, WA, 98109, USA. Kai.Wang@systemsbiology.com.
Shawn J SkerrettDivision of Pulmonary and Critical Care Medicine, University of Washington, Seattle, WA, 98104, USA. shawn@u.washington.edu.
Adrian OzinskyInstitute for Systems Biology, 401 Terry Ave. N, Seattle, WA, 98109, USA. aozinsky@systemsbiology.org.
Institute for Systems Biology · USUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFrancisella infection attenuates immune cell infiltration and expression of selected pro-inflammatory cytokines in response to endogenous LPS, suggesting the bacteria is actively antagonizing at least some part of the response to Toll-like receptor 4 (TLR4) engagement. The ability of different Francisella strains to inhibit the ability of E. coli LPS to induce a pulmonary inflammatory response, as measured by gene expression profiling, was examined to define the scope of modulation and identify of inflammatory genes/pathways that are specifically antagonized by a virulent F. tularensis infection.

resultsPrior aerosol exposure to F. tularensis subsp. tularensis, but not the live attenuated strain (LVS) of F. tularensis subsp. holarctica or F. novicida, significantly antagonized the transcriptional response in the lungs of infected mice exposed to aerosolized E. coli LPS. The response to E. coli LPS was not completely inhibited, suggesting that the bacteria is targeting further downstream of the TLR4 molecule. Analysis of the promotors of LPS-responsive genes that were perturbed by Type A Francisella infection identified candidate transcription factors that were potentially modulated by the bacteria, including multiple members of the forkhead transcription factor family (FoxA1, Foxa2, FoxD1, Foxd3, Foxf2, FoxI1, Fox03, Foxq1), IRF1, CEBPA, and Mef2. The annotated functional roles of the affected genes suggested that virulent Francisella infection suppressed cellular processes including mRNA processing, antiviral responses, intracellular trafficking, and regulation of the actin cytoskeleton. Surprisingly, despite the broad overall suppression of LPS-induced genes by virulent Francisella, and contrary to what was anticipated from prior studies, Type A Francisella did not inhibit the expression of the majority of LPS-induced cytokines, nor the expression of many classic annotated inflammatory genes.

conclusionsCollectively, this analysis demonstrates clear differences in the ability of different Francisella strains to modulate TLR4 signaling and identifies genes/pathways that are specifically targeted by virulent Type A Francisella.

Indexed as

AerosolsAnimalsFemaleFrancisella tularensisLipopolysaccharidesMaleMiceMice, Inbred BALB CMice, Inbred C57BLReverse Transcriptase Polymerase Chain ReactionSignal TransductionToll-Like Receptor 4TularemiaAerosolsLipopolysaccharidesToll-Like Receptor 4

Identifiers

PMID26510639
PMCPMC4625460
OpenAlexW1832259202

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.