Evidence map›Paper›PMID 26510530›Full record

ArticleJournal of proteome research2015

A Method for Comprehensive Glycosite-Mapping and Direct Quantitation of Serum Glycoproteins.

Qiuting Hong, L Renee Ruhaak, Carol Stroble, Evan Parker, Jincui Huang, Emanual Maverakis, Carlito B Lebrilla

Abstract read
In one paragraph

Article in Journal of proteome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
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  8. ACS omega · 2022
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. The glycoproteomics of hawk and caiman tears.BMC veterinary research · 2021
    Article
  15. Clinically Viable Assay for Monitoring Uromodulin Glycosylation.Journal of the American Society for Mass Spectrometry · 2021
    Article
  16. Review
  17. Calculating Glycoprotein Similarities From Mass Spectrometric Data.Molecular & cellular proteomics : MCP · 2021
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Qiuting HongDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
L Renee RuhaakDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
Carol StrobleDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
Evan ParkerDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
Jincui HuangDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
Emanual MaverakisDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
Carlito B LebrillaDepartment of Chemistry and ‡Department of Dermatology, School of Medicine, University of California , Davis, California 95616, United States.
University of California, Davis · US

Funding

The incorporation of human milk oligosaccharides in brain glycoconjugatesR01GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1999 to 2024
$6.3M
Activation of probiotic bifidobacteria by milk glyansR01AT008759 · NCCIH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GERMAN, BRUCE, LEBRILLA, CARLITO B · 2014 to 2018
$4.2M
Investigation and Development of New Therapeutic Avenues for SclerodermaDP2OD008752 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MAVERAKIS, EMANUAL M. · 2011 to 2016
$2.8M
Mechanism of Activation of Probiotic Bifidobacteria by Prebiotic Milk GlycansR01AT007079 · NCCIH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GERMAN, BRUCE, LEBRILLA, CARLITO B · 2012 to 2016
$2.2M
Structures, Functions, & Genetic Diversity of Oligosaccharides in MilkR01HD061923 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEBRILLA, CARLITO B · 2009 to 2013
$1.6M
Serum biomarkers for early detection of H. pylori-associated gastric cancerR01CA136647 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SOLNICK, JAY V. · 2009 to 2013
$1.5M
NCCIH NIH HHS R01 AT007079NCCIH NIH HHS R01 AT008759NCCIH NIH HHS R01AT008759NCI NIH HHS R01 CA136647NICHD NIH HHS R01 HD061923NICHD NIH HHS R01HD061923NIGMS NIH HHS R01 GM049077NIGMS NIH HHS R01GM049077NIH HHS 1DP2OD008752NIH HHS DP2 OD008752
6 · The paper itself

Abstract

A comprehensive glycan map was constructed for the top eight abundant glycoproteins in plasma using both specific and nonspecific enzyme digestions followed by nano liquid chromatography (LC)-chip/quadrupole time-of-flight mass spectrometry (MS) analysis. Glycopeptides were identified using an in-house software tool, GPFinder. A sensitive and reproducible multiple reaction monitoring (MRM) technique on a triple quadrupole MS was developed and applied to quantify immunoglobulins G, A, M, and their site-specific glycans simultaneously and directly from human serum/plasma without protein enrichments. A total of 64 glycopeptides and 15 peptides were monitored for IgG, IgA, and IgM in a 20 min ultra high performance (UP)LC gradient. The absolute protein contents were quantified using peptide calibration curves. The glycopeptide ion abundances were normalized to the respective protein abundances to separate protein glycosylation from protein expression. This technique yields higher method reproducibility and less sample loss when compared with the quantitation method that involves protein enrichments. The absolute protein quantitation has a wide linear range (3-4 orders of magnitude) and low limit of quantitation (femtomole level). This rapid and robust quantitation technique, which provides quantitative information for both proteins and glycosylation, will further facilitate disease biomarker discoveries.

Indexed as

alpha-MacroglobulinsAmino Acid SequenceChromatography, LiquidGlycopeptidesGlycoproteinsGlycosylationHumansImmunoglobulinsMass SpectrometryMolecular Sequence DataPeptide MappingReproducibility of Resultsalpha-MacroglobulinsGlycopeptidesGlycoproteinsImmunoglobulinsabsolute quantitationglycopeptideimmunoglobulinsite specific glycan analysis

Identifiers

PMID26510530
PMCPMC4670571
OpenAlexW2413825307

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.