Evidence map›Paper›PMID 26510014›Full record

ArticleeLife2015

Genetic and epigenetic variation in the lineage specification of regulatory T cells.

Aaron Arvey, Joris van der Veeken, George Plitas, Stephen S Rich, Patrick Concannon, Alexander Y Rudensky

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 55 citations in OpenAlex.

  1. Risk variants disrupting enhancers of TProceedings of the National Academy of Sciences of the United States of America · 2019
    Trial
  2. T Cell Thoughts.Immunological reviews · 2026
    Review
  3. Review
  4. Review
  5. Review
  6. The 'TNature reviews. Rheumatology · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Inhibition of FOXP3 by stapled alpha-helical peptides dampens regulatory T cell function.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Aaron ArveyImmunology Program, Howard Hughes Medical Institute, Memorial Sloan Kettering Cancer Center, New York, United States.
Joris van der VeekenImmunology Program, Howard Hughes Medical Institute, Memorial Sloan Kettering Cancer Center, New York, United States.
George PlitasLudwig Center for Cancer Immunotherapy, Memorial Sloan Kettering Cancer Center, New York, United States.
Stephen S RichCenter for Public Health Genomics, Department of Public Health Sciences, Division of Biostatistics and Epidemiology, University of Virginia, Charlottesville, United States.
Patrick ConcannonGenetics Institute, Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Florida, United States.
Alexander Y RudenskyImmunology Program, Howard Hughes Medical Institute, Memorial Sloan Kettering Cancer Center, New York, United States.
Howard Hughes Medical Institute · USMemorial Sloan Kettering Cancer Center · USUniversity of Florida · USUniversity of Virginia · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Expression and proteomic characterization of risk loci in type 1 diabetesDP3DK085678 · NIDDK · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2009 to 2009
$6.6M
Self Peptides Bound to MHC Class II In T Cell SelectionR37AI034206 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI RUDENSKY, ALEXANDER Y · 2009 to 2018
$4.8M
Decoding in vivo regulatory programs of CD4+ T lymphocyte populations in inflammaU01HG007893 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI LESLIE, CHRISTINA S, RUDENSKY, ALEXANDER Y · 2015 to 2017
$3.1M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NHGRI NIH HHS U01 HG007893NIAID NIH HHS 5R37AI034206NIAID NIH HHS R37 AI034206NIDDK NIH HHS DP3 DK085678
6 · The paper itself

Abstract

Regulatory T (Treg) cells, which suppress autoimmunity and other inflammatory states, are characterized by a distinct set of genetic elements controlling their gene expression. However, the extent of genetic and associated epigenetic variation in the Treg cell lineage and its possible relation to disease states in humans remain unknown. We explored evolutionary conservation of regulatory elements and natural human inter-individual epigenetic variation in Treg cells to identify the core transcriptional control program of lineage specification. Analysis of single nucleotide polymorphisms in core lineage-specific enhancers revealed disease associations, which were further corroborated by high-resolution genotyping to fine map causal polymorphisms in lineage-specific enhancers. Our findings suggest that a small set of regulatory elements specify the Treg lineage and that genetic variation in Treg cell-specific enhancers may alter Treg cell function contributing to polygenic disease.

Indexed as

Cell DifferentiationEpigenesis, GeneticGene Expression RegulationGenetic VariationAnimalsCells, CulturedEnhancer Elements, GeneticGene Expression ProfilingGenotypeHumansMiceMolecular Sequence DataPolymorphism, Single NucleotideRegulatory Elements, TranscriptionalSequence Analysis, DNAT-Lymphocytes, Regulatoryepigenomeevolutionary biologygenomicshumanimmune regulationimmunogeneticsimmunologymouseregulatory T cells

Identifiers

PMID26510014
PMCPMC4623597
OpenAlexW1839182831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.