Evidence map›Paper›PMID 26509598›Full record

ArticleACS chemical biology2015

Unbiased Selection of Peptide-Peptoid Hybrids Specific for Lung Cancer Compared to Normal Lung Epithelial Cells.

Jaya M Matharage, John D Minna, Rolf A Brekken, D Gomika Udugamasooriya

Abstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Beyond protein binding: recent advances in screening DNA-encoded libraries.Chemical communications (Cambridge, England) · 2019
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jaya M MatharageAdvanced Imaging Research Center, ‡Simmons Comprehensive Cancer Center, §Hamon Center for Therapeutic Oncology Research, ∥Departments of Biochemistry, ⊥Pharmacology, #Internal Medicine, and ▽Surgery, University of Texas Southwestern Medical Center , 5323 Harry Hines Blvd., Dallas, Texas 75390, United States.
John D MinnaAdvanced Imaging Research Center, ‡Simmons Comprehensive Cancer Center, §Hamon Center for Therapeutic Oncology Research, ∥Departments of Biochemistry, ⊥Pharmacology, #Internal Medicine, and ▽Surgery, University of Texas Southwestern Medical Center , 5323 Harry Hines Blvd., Dallas, Texas 75390, United States.
Rolf A BrekkenAdvanced Imaging Research Center, ‡Simmons Comprehensive Cancer Center, §Hamon Center for Therapeutic Oncology Research, ∥Departments of Biochemistry, ⊥Pharmacology, #Internal Medicine, and ▽Surgery, University of Texas Southwestern Medical Center , 5323 Harry Hines Blvd., Dallas, Texas 75390, United States.
D Gomika UdugamasooriyaAdvanced Imaging Research Center, ‡Simmons Comprehensive Cancer Center, §Hamon Center for Therapeutic Oncology Research, ∥Departments of Biochemistry, ⊥Pharmacology, #Internal Medicine, and ▽Surgery, University of Texas Southwestern Medical Center , 5323 Harry Hines Blvd., Dallas, Texas 75390, United States.

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GIBBONS, DON LYNN · 1996 to 2024
$57.4M
Lung cancer oncogenotype-selective drug target discoveryU01CA176284 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MACMILLAN, JOHN B, MINNA, JOHN D. · 2013 to 2016
$2.8M
Phosphatidylserine Targeted Tumor Cell Lytic PeptoidsR01CA175779 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI UDUGAMASOORIYA, DAMITH GOMIKA · 2013 to 2017
$1.5M
NCI NIH HHS P50 CA070907NCI NIH HHS P50CA70907NCI NIH HHS R01 CA175779NCI NIH HHS R01CA175779NCI NIH HHS U01 CA176284
6 · The paper itself

Abstract

To develop widely applicable diagnostic and potentially therapeutic approaches overcoming protein heterogeneity in human cancer, we have developed a technology to unbiasedly select high specificity compound(s) that bind any biomolecule (e.g., proteins, lipids, carbohydrates) presented on the cancer cell surface but not on normal cells. We utilized a peptidomimetic based on-bead two-color (OBTC) combinatorial cell screen that can detect differences between two cell surfaces at high accuracy by looking for beads (where each bead in the library had one peptide-peptoid hybrid on the surface) that only bound cancer but not normal cells. We screened a library of 393 216 compounds targeting HCC4017 lung adenocarcinoma cells (labeled in red) in the presence of HBEC30KT normal bronchial epithelial cells (labeled in green) derived from the same tissue of the same patient. This screen identified a peptide-peptoid hybrid called PPS1 which displayed high specific binding for HCC4017 cancer cells over HBEC30KT cells. Specificity was validated through on-bead, ELISA-like and magnetic bead pulldown studies, while a scrambled version of PPS1 did not show any binding. Of interest, the simple dimeric version (PPS1D1) displayed cytotoxic activity on HCC4017 cells, but not on normal HBEC30KT cells. PPS1D1 also strongly accumulated in HCC4017 lung cancer xenografts in mice over control constructs. We conclude that such combinatorial screens using tumor and normal cells from the same patient have significant potential to develop new reagents for cancer biology, diagnosis, and potentially therapy.

Indexed as

Models, BiologicalAnimalsCells, CulturedCell SurvivalCombinatorial Chemistry TechniquesEpithelial CellsHumansLungLung NeoplasmsMicePeptide LibraryPeptidesPeptoidsSubstrate SpecificityPeptide LibraryPeptidesPeptoids

Identifiers

PMID26509598
PMCPMC4774050

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.