ArticleScientific reports2015
In silico approach to reveal viral populations in grapevine cultivar Tannat using transcriptome data.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
- Virome analysis of field-collected chilli samples reveals diverse viruses.Virology journal · 2025Article
- The Evolution of Wisteria Vein Mosaic Virus: A Case Study Approach to Track the Emergence of New Potyvirus Threats.Pathogens (Basel, Switzerland) · 2024Article
- Multiple Infections with Viruses of the FamilyViruses · 2024Article
- Investigating Variability in Viral Presence and Abundance across Soybean Seed Development Stages Using Transcriptome Analysis.Plants (Basel, Switzerland) · 2023Article
- Unveiling Mycoviromes Using Fungal Transcriptomes.International journal of molecular sciences · 2022Article
- Complete Genome Sequence of a Novel MonopartitePlants (Basel, Switzerland) · 2022Article
- Article
- Occurrence and Genetic Characterization of Grapevine Pinot Gris Virus in Russia.Plants (Basel, Switzerland) · 2022Article
- Diagnosis of Viral Diseases Using Deep Sequencing and Metagenomics Analyses.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Comparison of Potato Viromes Between Introduced and Indigenous Varieties.Frontiers in microbiology · 2022Article
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- High-Throughput Sequencing of Small RNAs for the Sanitary Certification of Viruses in Grapevine.Frontiers in plant science · 2021Article
- Blueberry red ringspot virus genomes from Florida inferred through analysis of blueberry root transcriptomes.Scientific reports · 2020Article
- Article
- Robust Virome Profiling and Whole Genome Reconstruction of Viruses and Viroids Enabled by Use of Available mRNA and sRNA-Seq Datasets in Grapevine (Frontiers in microbiology · 2020Article
- Article
- Potato virus Y; the Andean connection.Virus evolution · 2019Article
- Detection of disease inPeerJ · 2019Article
- Agroinoculation of Grapevine Pinot Gris Virus in tobacco and grapevine provides insights on viral pathogenesis.PloS one · 2019Article
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Authors and funding
6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Viruses are ubiquitous and present in a wide range of settings, from living organisms to various environments. Although viruses are regarded as important pathogens in higher plants, viral populations in specific host plants have not yet been fully examined. This study revealed viral populations in grape berries obtained from a cultivar from a single vineyard using currently available grapevine transcriptomes. Eight viruses and two viroids were identified using 11 grapevine libraries. Virus-associated sequences in each transcriptome ranged from 0.2% (seed) to 8.8% (skin). The amount of viral RNAs and virus copy numbers was quantified, thus revealing the dominant virus or viroid in each individual library. In addition, five viral genomes were successfully assembled de novo using transcriptome data. Phylogenetic analyses revealed that the viruses and viroids might have originated from Europe, along with the host. Single nucleotide variation studies revealed the quasispecies of RNA viruses. Taken together, this study defines complex viral populations in three different grape tissues from a single vineyard.
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