Evidence map›Paper›PMID 26508574›Full record

ArticleEuropean journal of human genetics : EJHG2016

Heterozygous deletions at the ZEB1 locus verify haploinsufficiency as the mechanism of disease for posterior polymorphous corneal dystrophy type 3.

Petra Liskova, Cerys J Evans, Alice E Davidson, Marketa Zaliova, Lubica Dudakova, Marie Trkova, Viktor Stranecky, Nicole Carnt, Vincent Plagnol, Andrea L Vincent and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Loss-of-function variants inJournal of medical genetics · 2024
    Article
  4. Disruption ofHuman mutation · 2024
    Article
  5. Posterior Polymorphous Corneal Dystrophy in a Patient with a NovelInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. Update on the genetics of corneal endothelial dystrophies.Indian journal of ophthalmology · 2022
    Review
  8. Article
  9. Inactivation ofDisease models & mechanisms · 2020
    Article
  10. CUGC for posterior polymorphous corneal dystrophy (PPCD).European journal of human genetics : EJHG · 2020
    Article
  11. Article
  12. Article
  13. Transcriptomic Profiling of Posterior Polymorphous Corneal Dystrophy.Investigative ophthalmology & visual science · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Petra LiskovaInstitute of Inherited Metabolic Disorders, First Faculty of Medicine, Charles University in Prague and General University Hospital, Prague, Czech Republic.
Cerys J EvansUCL Institute of Ophthalmology, London, UK.
Alice E DavidsonUCL Institute of Ophthalmology, London, UK.
Marketa ZaliovaDepartment of Pediatric Hematology and Oncology, Second Faculty of Medicine, University Hospital Motol, Charles University in Prague, Prague, Czech Republic.
Lubica DudakovaInstitute of Inherited Metabolic Disorders, First Faculty of Medicine, Charles University in Prague and General University Hospital, Prague, Czech Republic.
Marie TrkovaGennet, Centre for Fetal Medicine and Reproductive Genetics, Prague, Czech Republic.
Viktor StraneckyInstitute of Inherited Metabolic Disorders, First Faculty of Medicine, Charles University in Prague and General University Hospital, Prague, Czech Republic.
Nicole CarntUCL Institute of Ophthalmology, London, UK.
Vincent PlagnolUCL Genetics Institute, London, UK.
Andrea L VincentDepartment of Ophthalmology, New Zealand National Eye Centre, Faculty of Medical and Health Sciences, University of Auckland, Auckland, New Zealand.
Stephen J TuftMoorfields Eye Hospital, London, UK.
Alison J HardcastleUCL Institute of Ophthalmology, London, UK.
University College London · GBCharles University · CZCzech Academy of Sciences, Institute of Molecular Genetics · CZGreenlane Clinical Centre · NZMoorfields Eye Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A substantial proportion of patients with posterior polymorphous corneal dystrophy (PPCD) lack a molecular diagnosis. We evaluated 14 unrelated probands who had a clinical diagnosis of PPCD who were previously determined to be negative for mutations in ZEB1 by direct sequencing. A combination of techniques was used including whole-exome sequencing (WES), single-nucleotide polymorphism (SNP) array copy number variation (CNV) analysis, quantitative real-time PCR, and long-range PCR. Segregation of potentially pathogenic changes with disease was confirmed, where possible, in family members. A putative run of homozygosity on chromosome 10 was identified by WES in a three-generation PPCD family, suggestive of a heterozygous deletion. SNP array genotyping followed by long-range PCR and direct sequencing to define the breakpoints confirmed the presence of a large deletion that encompassed multiple genes, including ZEB1. Identification of a heterozygous deletion spanning ZEB1 prompted us to further investigate potential CNVs at this locus in the remaining probands, leading to detection of two additional heterozygous ZEB1 gene deletions. This study demonstrates that ZEB1 mutations account for a larger proportion of PPCD than previously estimated, and supports the hypothesis that haploinsufficiency of ZEB1 is the underlying molecular mechanism of disease for PPCD3.

Indexed as

Gene DeletionHaploinsufficiencyAdolescentAdultAgedAged, 80 and overChildCorneal Dystrophies, HereditaryDNA Copy Number VariationsFemaleHeterozygoteHumansMaleMiddle AgedPedigreePolymorphism, Single NucleotideZEB1 protein, humanZinc Finger E-box-Binding Homeobox 1

Identifiers

PMID26508574
PMCPMC5070886
OpenAlexW1883567435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.