Evidence map›Paper›PMID 26507269›Full record

ArticleTransgenic research2016

Targeted modification of storage protein content resulting in improved amino acid composition of barley grain.

Md S I Sikdar, S Bowra, D Schmidt, G Dionisio, P B Holm, E Vincze

Abstract read
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In one paragraph

Article in Transgenic research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Breeding Canola (Plants (Basel, Switzerland) · 2021
    Review
  3. Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Md S I SikdarScience and Technology, Department of Molecular Biology and Genetics, Research Centre Flakkebjerg, Aarhus University, 4200, Slagelse, Denmark.
S BowraVerzyme (UK) Ltd., Plas Gogerddan, Aberystwyth, Wales, SY23 3EB, UK.
D SchmidtScience and Technology, Department of Molecular Biology and Genetics, Research Centre Flakkebjerg, Aarhus University, 4200, Slagelse, Denmark.
G DionisioScience and Technology, Department of Molecular Biology and Genetics, Research Centre Flakkebjerg, Aarhus University, 4200, Slagelse, Denmark.
P B HolmScience and Technology, Department of Molecular Biology and Genetics, Research Centre Flakkebjerg, Aarhus University, 4200, Slagelse, Denmark.
E VinczeScience and Technology, Department of Molecular Biology and Genetics, Research Centre Flakkebjerg, Aarhus University, 4200, Slagelse, Denmark. eva.vincze@mbg.au.dk.
Aarhus University · DKAberystwyth University · GBHajee Mohammad Danesh Science and Technology University · BDUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C-hordein in barley and ω-gliadins in wheat are members of the prolamins protein families. Prolamins are the major component of cereal storage proteins and composed of non-essential amino acids (AA) such as proline and glutamine therefore have low nutritional value. Using double stranded RNAi silencing technology directed towards C-hordein we obtained transgenic barley lines with up to 94.7% reduction in the levels of C-hordein protein relative to the parental line. The composition of the prolamin fraction of the barley parental line cv. Golden Promise was resolved using SDS-PAGE electrophoresis, the protein band were excised and the proteins identified by quadrupole-time-of-flight mass spectrometry. Subsequent SDS-PAGE separation and analysis of the prolamin fraction of the transgenic lines revealed a reduction in the amounts of C-hordeins and increases in the content of other hordein family members. Analysis of the AA composition of the transgenic lines showed that the level of essential amino acids increased with a concomitant reduction in proline and glutamine. Both the barley C-hordein and wheat ω-gliadin genes proved successful for RNAi-gene mediated suppression of barley C-hordein level. All transgenic lines that exhibited a reduction for C-hordein showed off-target effects: the lines exhibited increased level of B/γ-hordein while D-hordein level was reduced. Furthermore, the multicopy insertions correlated negatively with silencing.

Indexed as

Amino AcidsElectrophoresis, Polyacrylamide GelGliadinGlutensHordeumPlants, Genetically ModifiedProlaminsRNA InterferenceSeedsTandem Mass SpectrometryTriticumAmino AcidsGliadinGlutensProlaminsAlteration multigene familiesAntisense transgenic plantsCereal storage proteinsGrain protein compositionMass spectrometry

Identifiers

PMID26507269
OpenAlexW1826804757

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.