Evidence map›Paper›PMID 26506370›Full record

ArticleViruses2015

Complete Genome and Phylogeny of Puumala Hantavirus Isolates Circulating in France.

Guillaume Castel, Mathilde Couteaudier, Frank Sauvage, Jean-Baptiste Pons, Séverine Murri, Angelina Plyusnina, Dominique Pontier, Jean-François Cosson, Alexander Plyusnin, Philippe Marianneau and 1 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  9. Hantavirus-Epidemiology and infection · 2021
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  11. Orthohantaviruses, Emerging Zoonotic Pathogens.Pathogens (Basel, Switzerland) · 2020
    Review
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  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Guillaume CastelINRA-UMR 1062 CBGP, 755 Avenue Campus Agropolis, CS30016, 34988 Montferrier sur Lez, France. guillaume.castel@supagro.inra.fr.
Mathilde CouteaudierINRA-UR1282, Biologie Virus Aviaire, 37380 Nouzilly, France. mathilde.couteaudier@hotmail.fr.
Frank SauvageCNRS-Université Lyon 1, Laboratoire de Biométrie et Biologie Evolutive (UMR5558), F-69622 Villeurbanne, France. sauvage_frank@yahoo.fr.
Jean-Baptiste PonsCNRS-Université Lyon 1, Laboratoire de Biométrie et Biologie Evolutive (UMR5558), F-69622 Villeurbanne, France. jean-baptiste.pons@universite-lyon.fr.
Séverine MurriANSES-Laboratoire de Lyon, Unité Virologie, 31 Avenue Tony Garnier, 69007 Lyon, France. severine.murri@anses.fr.
Angelina PlyusninaDepartment of Virology, University of Helsinki, Helsinki FI-00014, Finland. angelina.plyusnina@helsinki.fi.
Dominique PontierCNRS-Université Lyon 1, Laboratoire de Biométrie et Biologie Evolutive (UMR5558), F-69622 Villeurbanne, France. dominique.pontier@univ-lyon1.fr.
Jean-François CossonINRA-UMR 1062 CBGP, 755 Avenue Campus Agropolis, CS30016, 34988 Montferrier sur Lez, France. cosson@supagro.inra.fr.
Alexander PlyusninDepartment of Virology, University of Helsinki, Helsinki FI-00014, Finland. alexander.plyusnin@helsinki.fi.
Philippe MarianneauANSES-Laboratoire de Lyon, Unité Virologie, 31 Avenue Tony Garnier, 69007 Lyon, France. philippe.marianneau@anses.fr.
Noël TordoInstitut Pasteur, Unité des Stratégies Antivirales, WHO collaborative Centre for Viral Haemorrhagic Fevers and Arboviruses, 25 rue du Docteur Roux, 75015 Paris, France. noel.tordo@pasteur.fr.
Université Claude Bernard Lyon 1 · FRAgropolis International · FRUniversity of Helsinki · FIBiologie des oiseaux et aviculture · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Puumala virus (PUUV) is the agent of nephropathia epidemica (NE), a mild form of hemorrhagic fever with renal syndrome (HFRS) in Europe. NE incidence presents a high spatial variation throughout France, while the geographical distribution of the wild reservoir of PUUV, the bank vole, is rather continuous. A missing piece of the puzzle is the current distribution and the genetic variation of PUUV in France, which has been overlooked until now and remains poorly understood. During a population survey, from 2008 to 2011, bank voles were trapped in eight different forests of France located in areas known to be endemic for NE or in area from where no NE case has been reported until now. Bank voles were tested for immunoglobulin (Ig)G ELISA serology and two seropositive animals for each of three different areas (Ardennes, Jura and Orleans) were then subjected to laboratory analyses in order to sequence the whole S, M and L segments of PUUV. Phylogenetic analyses revealed that French PUUV isolates globally belong to the central European (CE) lineage although isolates from Ardennes are clearly distinct from those in Jura and Orleans, suggesting a different evolutionary history and origin of PUUV introduction in France. Sequence analyses revealed specific amino acid signatures along the N protein, including in PUUV from the Orleans region from where NE in humans has never been reported. The relevance of these mutations in term of pathophysiology is discussed.

Indexed as

Disease ReservoirsGenome, ViralSequence Analysis, DNAAnimalsArvicolinaeCluster AnalysisFemaleFranceMaleMolecular Sequence DataPhylogeographyPuumala virusRNA, ViralSequence HomologyRNA, Viralcomplete genomediversityFranceHantavirusphylogenyPuumala virus

Identifiers

PMID26506370
PMCPMC4632392
OpenAlexW2118518148

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.