ArticlePloS one2015
Gene Expression Profiles in Rice Developing Ovules Provided Evidence for the Role of Sporophytic Tissue in Female Gametophyte Development.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 28 citations in OpenAlex.
- A staging framework to study rice female gametophyte development.Plant reproduction · 2026Article
- Heat stress impact on rice reproductive processes: challenges and new approaches.Frontiers in genome editing · 2026Review
- Selfing Shapes Fixation of a Mutant Allele Under Flux Equilibrium.Genome biology and evolution · 2024Article
- Hormonal influence on maize inflorescence development and reproduction.Plant reproduction · 2024Review
- OsmiRNA5488 Regulates the Development of Embryo Sacs and TargetsInternational journal of molecular sciences · 2023Article
- A study of the heterochronic sense/antisense RNA representation in florets of sexual and apomictic Paspalum notatum.BMC genomics · 2021Article
- Comparative Transcriptomic and Metabolic Analyses Reveal the Molecular Mechanism of Ovule Development in the Orchid,Frontiers in plant science · 2021Article
- Comparative Expression Profiling Reveals Genes Involved in Megasporogenesis.Plant physiology · 2020Article
- Closing Gaps and Opening New Avenues during Megasporogenesis of Rice.Plant physiology · 2020Article
- Global identification and analysis revealed differentially expressed lncRNAs associated with meiosis and low fertility in autotetraploid rice.BMC plant biology · 2020Article
- Transcriptome analysis reveals the different compatibility between LAAA × AA and LAAA × LL inBreeding science · 2019Article
- Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis.BMC genomics · 2019Article
- Article
- Genome-Wide Analysis of DNA Methylation During Ovule Development of Female-Sterile RiceG3 (Bethesda, Md.) · 2017Article
- Identification and expression analysis of microRNAs during ovule development in rice (Oryza sativa) by deep sequencing.Plant cell reports · 2017Article
- Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice.BMC genomics · 2017Article
- Article
- Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.Frontiers in plant science · 2017Article
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The development of ovule in rice (Oryza sativa) is vital during its life cycle. To gain more understanding of the molecular events associated with the ovule development, we used RNA sequencing approach to perform transcriptome-profiling analysis of the leaf and ovules at four developmental stages. In total, 25,401, 23,343, 23,647 and 23,806 genes were identified from the four developmental stages of the ovule, respectively. We identified a number of differently expressed genes (DEGs) from three adjacent stage comparisons, which may play crucial roles in ovule development. The DEGs were then conducted functional annotations and Kyoto encyclopedia of genes and genomes (KEGG) pathway analyses. Genes related to cellular component biogenesis, membrane-bounded organelles and reproductive regulation were identified to be highly expressed during the ovule development. Different expression levels of auxin-related and cytokinin-related genes were also identified at various stages, providing evidence for the role of sporophytic ovule tissue in female gametophyte development from the aspect of gene expression. Generally, an overall transcriptome analysis for rice ovule development has been conducted. These results increased our knowledge of the complex molecular and cellular events that occur during the development of rice ovule and provided foundation for further studies on rice ovule development.
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