ArticleHorticulture research2015
Developing single nucleotide polymorphism (SNP) markers from transcriptome sequences for identification of longan (Dimocarpus longan) germplasm.
Article in Horticulture research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Comparative analysis of complete chloroplast genomes provides insights into phylogenetic relationships and screening of polymorphic markers in Dimocarpus and related species.BMC plant biology · 2026Article
- SNP Fingerprinting for Germplasm Identification of the Fast-Growing Pacific oyster (Crassostrea gigas) "Haida No. 1" Variety.Marine biotechnology (New York, N.Y.) · 2024Article
- Development of KASP markers, SNP fingerprinting and population genetic analysis ofFrontiers in plant science · 2024Article
- Effective identification of varieties by nucleotide polymorphisms and its application for essentially derived variety identification in rice.BMC bioinformatics · 2022Article
- Designing Allele-Specific Competitive-Extension PCR-Based Assays for High-Throughput Genotyping and Gene Characterization.Frontiers in molecular biosciences · 2022Review
- Genome-wide analysis of AP2/ERF superfamily in lotus (Nelumbo nucifera) and the association between NnADAP and rhizome morphology.BMC genomics · 2021Article
- Modified "Allele-Specific qPCR" Method for SNP Genotyping Based on FRET.Frontiers in plant science · 2021Article
- Identification of Single Nucleotide Polymorphism inFrontiers in genetics · 2021Article
- Article
- Floral Induction of Longan (Frontiers in plant science · 2021Review
- Article
- Genetic diversity and population structure of black cottonwood (Populus deltoides) revealed using simple sequence repeat markers.BMC genetics · 2020Article
- Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.).Scientific reports · 2019Article
- De novo transcriptome of Gymnema sylvestre identified putative lncRNA and genes regulating terpenoid biosynthesis pathway.Scientific reports · 2019Article
- Identification and validation of SNP markers linked to seed toxicity in Jatropha curcas L.Scientific reports · 2019Article
- Identification of TaPPH-7A haplotypes and development of a molecular marker associated with important agronomic traits in common wheat.BMC plant biology · 2019Article
- Comprehensive analysis of the longan transcriptome reveals distinct regulatory programs during the floral transition.BMC genomics · 2019Article
- Transcriptome sequencing assisted discovery and computational analysis of novel SNPs associated with flowering inHorticulture research · 2019Article
- Usefulness of a New Large Set of High Throughput EST-SNP Markers as a Tool for Olive Germplasm Collection Management.Frontiers in plant science · 2018Article
- A First Phylogeny of the Genus Dimocarpus and Suggestions for Revision of Some Taxa Based on Molecular and Morphological Evidence.Scientific reports · 2017Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Longan (Dimocarpus longan Lour.) is an important tropical fruit tree crop. Accurate varietal identification is essential for germplasm management and breeding. Using longan transcriptome sequences from public databases, we developed single nucleotide polymorphism (SNP) markers; validated 60 SNPs in 50 longan germplasm accessions, including cultivated varieties and wild germplasm; and designated 25 SNP markers that unambiguously identified all tested longan varieties with high statistical rigor (P<0.0001). Multiple trees from the same clone were verified and off-type trees were identified. Diversity analysis revealed genetic relationships among analyzed accessions. Cultivated varieties differed significantly from wild populations (F st=0.300; P<0.001), demonstrating untapped genetic diversity for germplasm conservation and utilization. Within cultivated varieties, apparent differences between varieties from China and those from Thailand and Hawaii indicated geographic patterns of genetic differentiation. These SNP markers provide a powerful tool to manage longan genetic resources and breeding, with accurate and efficient genotype identification.
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