ArticleHorticulture research2014
Genomic variants of genes associated with three horticultural traits in apple revealed by genome re-sequencing.
Article in Horticulture research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
17 citing papers in PubMed, 43 citations in OpenAlex.
- Genetic Structure of Populations ofJournal of fungi (Basel, Switzerland) · 2026Article
- Deep resequencing unveils novel SNPs, InDels, and large structural variants for the clonal fingerprinting of sweet orange [Citrus sinensis (L.) Osbeck].The plant genome · 2025Article
- Origins and Genetic Characteristics of Egyptian Peach.International journal of molecular sciences · 2024Article
- Editorial: Multi-omics and computational biology in horticultural plants: from genotype to phenotype, volume II.Frontiers in plant science · 2024Article
- MdWRKY75e enhances resistance to Alternaria alternata in Malus domestica.Horticulture research · 2021Article
- Transcriptional regulation of bark freezing tolerance in apple (Malus domestica Borkh.).Horticulture research · 2020Article
- Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset.BMC genomics · 2020Article
- Comparison of multiple algorithms to reliably detect structural variants in pears.BMC genomics · 2020Article
- A new genomic tool for walnut (Juglans regia L.): development and validation of the high-density Axiom™ J. regia 700K SNP genotyping array.Plant biotechnology journal · 2019Article
- Mapping Gene Markers for Apple Fruit Ring Rot Disease Resistance Using a Multi-omics Approach.G3 (Bethesda, Md.) · 2019Article
- Mapping of a Major QTL forFrontiers in plant science · 2018Article
- The Population Genetics ofFrontiers in microbiology · 2018Article
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- Genome-Wide Detection of SNP and SV Variations to Reveal Early Ripening-Related Genes in Grape.PloS one · 2016Article
- Genome-editing technologies and their potential application in horticultural crop breeding.Horticulture research · 2015Review
- Transcriptomic analysis reveals numerous diverse protein kinases and transcription factors involved in desiccation tolerance in the resurrection plant Myrothamnus flabellifolia.Horticulture research · 2015Article
Corrections and comments
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The apple (Malus × domestica Borkh.) cultivar 'Su Shuai' exhibits greater disease resistance, shorter internodes and lighter fruit flavor compared with its parents 'Golden Delicious' and 'Indo'. To obtain a comprehensive overview of the sequence variation in these three horticultural traits, the genomes of 'Su Shuai' and 'Indo' were resequenced using next-generation sequencing and compared to the genome of 'Golden Delicious'. A wide range of genetic variations were detected, including 2 454 406 and 18 749 349 single nucleotide polymorphism (SNP) and 59 547 and 50 143 structural variants (SVs) in the 'Indo' and 'Su Shuai' genomes, respectively. Among the SVs in 'Su Shuai', 17 genes related to disease resistance, 10 genes related to Gibberellin (GA) and 19 genes associated with fruit flavor were identified. The expression patterns of eight of the SV genes were examined using reverse transcription-quantitative polymerase chain reaction (RT-qPCR). The results of this study illustrate the genomic variation in these cultivars and provide evidence for a genetic basis for the horticultural traits of disease resistance, short internodes and lighter flavor exhibited in these cultivars. These results provide a genetic basis for the phenotypic characteristics of 'Su Shuai' and, as such, these SVs could serve as gene-specific molecular markers in maker-assisted breeding of apples.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.