Evidence map›Paper›PMID 26504535›Full record

ArticleHorticulture research2014

Genome and transcriptome analysis of the grapevine (Vitis vinifera L.) WRKY gene family.

Min Wang, Alessandro Vannozzi, Gang Wang, Ying-Hai Liang, Giovanni Battista Tornielli, Sara Zenoni, Erika Cavallini, Mario Pezzotti, Zong-Ming Max Cheng

Abstract read
In one paragraph

Article in Horticulture research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed.

  1. Article
  2. Article
  3. First brassinosteroid-based dwarf mutant discovered and characterized in grapevine.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  4. Article
  5. Review
  6. VviWRKY24 promotesHorticulture research · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Frontiers in plant science · 2024
    Article
  14. Review
  15. Article
  16. Article
  17. Expansion and adaptive evolution of theMarine life science & technology · 2023
    Article
  18. Article
  19. International journal of molecular sciences · 2023
    Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Min WangFruit Crop Systems Biology Laboratory, College of Horticulture, Nanjing Agricultural University , Nanjing, 210095, China.
Alessandro VannozziDepartment of Agronomy, Food, Natural resources, Animals and Environment, University of Padova , 35020 Legnaro, PD, Italy.
Gang WangFruit Crop Systems Biology Laboratory, College of Horticulture, Nanjing Agricultural University , Nanjing, 210095, China.
Ying-Hai LiangFruit Crop Systems Biology Laboratory, College of Horticulture, Nanjing Agricultural University , Nanjing, 210095, China.
Giovanni Battista TornielliDipartimento di Biotecnologie, Università degli Studi di Verona , 37134 Verona, Italy.
Sara ZenoniDipartimento di Biotecnologie, Università degli Studi di Verona , 37134 Verona, Italy.
Erika CavalliniDipartimento di Biotecnologie, Università degli Studi di Verona , 37134 Verona, Italy.
Mario PezzottiDipartimento di Biotecnologie, Università degli Studi di Verona , 37134 Verona, Italy.
Zong-Ming Max ChengFruit Crop Systems Biology Laboratory, College of Horticulture, Nanjing Agricultural University , Nanjing, 210095, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant WRKY gene family represents an ancient and complex class of zinc-finger transcription factors (TFs) that are involved in the regulation of various physiological processes, such as development and senescence, and in plant response to many biotic and abiotic stresses. Despite the growing number of studies on the genomic organisation of WRKY gene family in different species, little information is available about this family in grapevine (Vitis vinifera L.). In the present study, a total number of 59 putative grapevine WRKY transcription factors (VvWRKYs) were identified based on the analysis of various genomic and proteomic grapevine databases. According to their structural and phylogentic features, the identified grapevine WRKY transcription factors were classified into three main groups. In order to shed light into their regulatory roles in growth and development as well as in response to biotic and abiotic stress in grapevine, the VvWRKYs expression profiles were examined in publicly available microarray data. Bioinformatics analysis of these data revealed distinct temporal and spatial expression patterns of VvWRKYs in various tissues, organs and developmental stages, as well as in response to biotic and abiotic stresses. To also extend our analysis to situations not covered by the arrays and to validate our results, the expression profiles of selected VvWRKYs in response to drought stress, Erysiphe necator (powdery mildew) infection, and hormone treatments (salicilic acid and ethylene), were investigated by quantitative real-time reverse transcription PCR (qRT-PCR). The present study provides a foundation for further comparative genomics and functional studies of this important class of transcriptional regulators in grapevine.

Identifiers

PMID26504535
PMCPMC4596322

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.