ArticleHorticulture research2014
Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes.
Article in Horticulture research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- The Role of Endogenous Hormones in Regulating Early Development of Stone Fruit.Plants (Basel, Switzerland) · 2026Review
- ABA Biosynthesis- and Signaling-Related Gene Expression Differences between Sweet Cherry Fruits Suggest Attenuation of ABA Pathway in Bicolored Cultivars.Plants (Basel, Switzerland) · 2023Article
- Orchard Net Covers Improve Resistance to Cherry Cracking Disorder.Foods (Basel, Switzerland) · 2023Article
- Parthenocarpy-related genes induced by naphthalene acetic acid in oil palm interspecific O × G [Frontiers in genetics · 2023Article
- Molecular mechanisms involved in fruit cracking: A review.Frontiers in plant science · 2023Review
- Molecular Biology, Composition and Physiological Functions of Cuticle Lipids in Fleshy Fruits.Plants (Basel, Switzerland) · 2022Review
- Article
- Multi-year analyses on three populations reveal the first stable QTLs for tolerance to rain-induced fruit cracking in sweet cherry (Prunus avium L.).Horticulture research · 2021Article
- Recent Duplications Dominate VQ and WRKY Gene Expansions in SixInternational journal of genomics · 2021Article
- Genotype- and tissue-specific metabolic networks and hub genes involved in water-induced distinct sweet cherry fruit cracking phenotypes.Computational and structural biotechnology journal · 2021Article
- Comparative transcriptome analysis reveals key genes potentially related to organic acid and sugar accumulation in loquat.PloS one · 2021Article
- Molecular Bases of Fruit Quality inInternational journal of molecular sciences · 2020Review
- Gibberellic Acid Modifies the Transcript Abundance of ABA Pathway Orthologs and Modulates Sweet Cherry (Plants (Basel, Switzerland) · 2020Article
- Cuticular waxes of nectarines during fruit development in relation to surface conductance and susceptibility to Monilinia laxa.Journal of experimental botany · 2020Article
- Isolation and Analysis of Anthocyanin Pathway Genes fromPlants (Basel, Switzerland) · 2020Article
- Sweet Cherry (International journal of molecular sciences · 2020Article
- Analysis of Metabolites and Gene Expression Changes Relative to Apricot (Frontiers in plant science · 2020Article
- NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit.Metabolites · 2019Article
- A fruit firmness QTL identified on linkage group 4 in sweet cherry (Prunus avium L.) is associated with domesticated and bred germplasm.Scientific reports · 2019Article
- Identification of the laccase-like multicopper oxidase gene family of sweet cherry (Prunus avium L.) and expression analysis in six ancient Tuscan varieties.Scientific reports · 2019Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The exocarp, or skin, of fleshy fruit is a specialized tissue that protects the fruit, attracts seed dispersing fruit eaters, and has large economical relevance for fruit quality. Development of the exocarp involves regulated activities of many genes. This research analyzed global gene expression in the exocarp of developing sweet cherry (Prunus avium L., 'Regina'), a fruit crop species with little public genomic resources. A catalog of transcript models (contigs) representing expressed genes was constructed from de novo assembled short complementary DNA (cDNA) sequences generated from developing fruit between flowering and maturity at 14 time points. Expression levels in each sample were estimated for 34 695 contigs from numbers of reads mapping to each contig. Contigs were annotated functionally based on BLAST, gene ontology and InterProScan analyses. Coregulated genes were detected using partitional clustering of expression patterns. The results are discussed with emphasis on genes putatively involved in cuticle deposition, cell wall metabolism and sugar transport. The high temporal resolution of the expression patterns presented here reveals finely tuned developmental specialization of individual members of gene families. Moreover, the de novo assembled sweet cherry fruit transcriptome with 7760 full-length protein coding sequences and over 20 000 other, annotated cDNA sequences together with their developmental expression patterns is expected to accelerate molecular research on this important tree fruit crop.
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Registered trials
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