ArticleHorticulture research2014
Identification of SSRs and differentially expressed genes in two cultivars of celery (Apium graveolens L.) by deep transcriptome sequencing.
Article in Horticulture research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Article
- Comparative and Phylogenetic Analysis of the Chloroplast Genomes of Four Wild Species of the GenusGenes · 2025Article
- AgMYB5, an MYB transcription factor from celery, enhanced β-carotene synthesis and promoted drought tolerance in transgenic Arabidopsis.BMC plant biology · 2023Article
- A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges.Current research in food science · 2023Review
- Comprehensive analysis of HSF genes from celery (Frontiers in plant science · 2023Article
- Loci underlying leaf agronomic traits identified by re-sequencing celery accessions based on an assembled genome.iScience · 2022Article
- Combined Analysis of the Metabolome and Transcriptome to Explore Heat Stress Responses and Adaptation Mechanisms in Celery (International journal of molecular sciences · 2022Article
- Origin, evolution, breeding, and omics of Apiaceae: a family of vegetables and medicinal plants.Horticulture research · 2022Article
- Integrative genome, transcriptome, microRNA, and degradome analysis of water dropwort (Oenanthe javanica) in response to water stress.Horticulture research · 2021Article
- Impact of Genomic and Transcriptomic Resources on Apiaceae Crop Breeding Strategies.International journal of molecular sciences · 2021Review
- The Accumulation of Lutein and β-Carotene and Transcript Profiling of Genes Related to Carotenoids Biosynthesis in Yellow Celery.Molecular biotechnology · 2021Article
- The celery genome sequence reveals sequential paleo-polyploidizations, karyotype evolution and resistance gene reduction in apiales.Plant biotechnology journal · 2021Article
- Article
- The genome sequence of celery (Horticulture research · 2020Article
- Constructing a Core Collection of the Medicinal PlantFrontiers in plant science · 2020Article
- Isolation, purification and characterization of an ascorbate peroxidase from celery and overexpression of the AgAPX1 gene enhanced ascorbate content and drought tolerance in Arabidopsis.BMC plant biology · 2019Article
- Elevated gibberellin altered morphology, anatomical structure, and transcriptional regulatory networks of hormones in celery leaves.Protoplasma · 2019Article
- Article
- Transcriptome analysis reveals immune-related gene expression changes with age in giant panda (Aging · 2019Article
- Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Celery (Apium graveolens L.) is one of the most important and widely grown vegetables in the Apiaceae family. Due to the lack of comprehensive genomic resources, research on celery has mainly utilized physiological and biochemical approaches, rather than molecular biology, to study this crop. Transcriptome sequencing has become an efficient and economic technology for obtaining information on gene expression that can greatly facilitate molecular and genomic studies of species for which a sequenced genome is not available. In the present study, 15 893 516 and 19 818 161 high-quality sequences were obtained by RNA-seq from two celery varieties 'Ventura' and 'Jinnan Shiqin', respectively. The obtained reads were assembled into 39 584 and 41 740 unigenes with mean lengths of 683 bp and 690 bp, respectively. A total of 1939 simple sequence repeat (SSR) markers were identified in 'Ventura' and 2004 SSRs in 'Jinnan Shiqin'. Di-nucleotide repeats were the most common repeat motif, accounting for 55.49% and 54.84% in 'Ventura' and 'Jinnan Shiqin', respectively. A comparison of expressed genes between the two libraries, identified 338 differentially expressed genes (DEGs). Three hundred and three of the DEGs were annotated based on a sequence similarity search utilizing eight public databases. Additionally, the expression profile of eight annotated DEGs was characterized in response to abiotic stresses. The collective data generated in the present research represent a valuable resource for further genetic and molecular studies in celery.
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