Evidence map›Paper›PMID 26504226›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Discovery and functional characterization of a neomorphic PTEN mutation.

Helio A Costa, Michael G Leitner, Martin L Sos, Angeliki Mavrantoni, Anna Rychkova, Jeffrey R Johnson, Billy W Newton, Muh-Ching Yee, Francisco M De La Vega, James M Ford and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Helio A CostaDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Michael G LeitnerDepartment of Neurophysiology, Philipps-Universität Marburg, 35037 Marburg, Germany;
Martin L SosDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158; Howard Hughes Medical Institute, San Francisco, CA 94158;
Angeliki MavrantoniDepartment of Neurophysiology, Philipps-Universität Marburg, 35037 Marburg, Germany;
Anna RychkovaDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Jeffrey R JohnsonDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158; J. David Gladstone Institutes, San Francisco, CA 94158.
Billy W NewtonDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158; J. David Gladstone Institutes, San Francisco, CA 94158.
Muh-Ching YeeDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Francisco M De La VegaDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
James M FordDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Nevan J KroganDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158; J. David Gladstone Institutes, San Francisco, CA 94158.
Kevan M ShokatDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158; Howard Hughes Medical Institute, San Francisco, CA 94158;
Dominik OliverDepartment of Neurophysiology, Philipps-Universität Marburg, 35037 Marburg, Germany;
Christian R HalaszovichDepartment of Neurophysiology, Philipps-Universität Marburg, 35037 Marburg, Germany; cdbustam@stanford.edu christian.halaszovich@staff.uni-marburg.de.
Carlos D BustamanteDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305; cdbustam@stanford.edu christian.halaszovich@staff.uni-marburg.de.
Stanford University · USPhilipps University of Marburg · DEUniversity of California, San Francisco · USGladstone Institutes · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI YOUNG, JOHN A T · 2010 to 2014
$20.4M
Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
Unbiased Functional Characterization of Enterovirus-Host InteractionsP01AI091575 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDINO, RAUL · 2011 to 2015
$10.5M
Clinically Relevant Genome Variation DatabaseU01HG007436 · NHGRI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, PLON, SHARON E. · 2013 to 2016
$10.5M
NHGRI NIH HHS U01 HG007436NHGRI NIH HHS U01HG007436NIAID NIH HHS P01 AI090935NIAID NIH HHS P01AI090935NIAID NIH HHS P01 AI091575NIAID NIH HHS P01AI091575NIAID NIH HHS P30 AI027763NIGMS NIH HHS P50 GM081879NIGMS NIH HHS P50GM081879NIGMS NIH HHS P50 GM082250NIGMS NIH HHS P50GM082250
6 · The paper itself

Abstract

Although a variety of genetic alterations have been found across cancer types, the identification and functional characterization of candidate driver genetic lesions in an individual patient and their translation into clinically actionable strategies remain major hurdles. Here, we use whole genome sequencing of a prostate cancer tumor, computational analyses, and experimental validation to identify and predict novel oncogenic activity arising from a point mutation in the phosphatase and tensin homolog (PTEN) tumor suppressor protein. We demonstrate that this mutation (p.A126G) produces an enzymatic gain-of-function in PTEN, shifting its function from a phosphoinositide (PI) 3-phosphatase to a phosphoinositide (PI) 5-phosphatase. Using cellular assays, we demonstrate that this gain-of-function activity shifts cellular phosphoinositide levels, hyperactivates the PI3K/Akt cell proliferation pathway, and exhibits increased cell migration beyond canonical PTEN loss-of-function mutants. These findings suggest that mutationally modified PTEN can actively contribute to well-defined hallmarks of cancer. Lastly, we demonstrate that these effects can be substantially mitigated through chemical PI3K inhibitors. These results demonstrate a new dysfunction paradigm for PTEN cancer biology and suggest a potential framework for the translation of genomic data into actionable clinical strategies for targeted patient therapy.

Indexed as

Genes, Tumor SuppressorAnalysis of VarianceAnimalsBase SequenceCell MovementCell ProliferationCHO CellsComputational BiologyCricetinaeCricetulusHumansImmunoblottingMaleMicroscopy, FluorescenceMolecular Sequence AnnotationMolecular Sequence DataNeoplasm ProteinsPhosphatidylinositolsPhosphoinositide 5-PhosphatasesPhosphoric Monoester HydrolasesPTEN PhosphohydrolasePTEN protein, humanfunctional genomicsPTENtumor suppressor

Identifiers

PMID26504226
PMCPMC4653168
OpenAlexW2168391883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.