Evidence map›Paper›PMID 26504196›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Cryo-EM structures elucidate neutralizing mechanisms of anti-chikungunya human monoclonal antibodies with therapeutic activity.

Feng Long, Rachel H Fong, Stephen K Austin, Zhenguo Chen, Thomas Klose, Andrei Fokine, Yue Liu, Jason Porta, Gopal Sapparapu, Wataru Akahata and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  8. Article
  9. The evolution of chikungunya virus circulating in Indonesia: Sequence analysis of the orf2 gene encoding the viral structural proteins.International microbiology : the official journal of the Spanish Society for Microbiology · 2023
    Article
  10. Review
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  12. Computational design of N-linked glycans for high throughput epitope profiling.Protein science : a publication of the Protein Society · 2023
    Article
  13. Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Feng LongDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Rachel H FongIntegral Molecular, Inc., Philadelphia, PA 19104;
Stephen K AustinDepartments of Medicine, Molecular Microbiology, Pathology, and Immunology, Washington University School of Medicine, St. Louis, MO 63110;
Zhenguo ChenDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Andrei FokineDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Yue LiuDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Jason PortaDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Gopal SapparapuDepartment of Pediatrics, Vanderbilt University, Nashville, TN 37232;
Wataru AkahataVLP Therapeutics, LLC, Gaithersburg, MD 20878;
Benjamin J DoranzIntegral Molecular, Inc., Philadelphia, PA 19104;
James E CroweDepartment of Pediatrics, Vanderbilt University, Nashville, TN 37232; Departments of Pathology, Microbiology, and Immunology, Vanderbilt University, Nashville, TN 37232; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Vanderbilt University, Nashville, TN 37232.
Michael S DiamondDepartments of Medicine, Molecular Microbiology, Pathology, and Immunology, Washington University School of Medicine, St. Louis, MO 63110;
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907; mr@purdue.edu.
Purdue University West Lafayette · USIntegral Molecular (United States) · USWashington University in St. Louis · USVanderbilt University · USVanderbilt University Medical Center · USVLP Therapeutics (United States) · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
Structural Studies of TogavirusesR01AI095366 · NIAID · PURDUE UNIVERSITY · PI KUHN, RICHARD J. · 2012 to 2023
$6.8M
Antibody Based Therapeuticcs for Chikungunya VirusR01AI089591 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S · 2010 to 2014
$4.7M
Structural and functional basis of ultra potent CHKV neutralization by human mAbsR01AI114816 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E, DIAMOND, MICHAEL S · 2015 to 2019
$3.7M
BioCARS: A Synchrotron Structure Biology ResourceR24GM111072 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2013 to 2016
$2.3M
NCI NIH HHS P30 CA023168NIAID NIH HHS HHSN272200900055CNIAID NIH HHS R01 AI089591NIAID NIH HHS R01 AI095366NIAID NIH HHS R01 AI114816NIGMS NIH HHS R24 GM111072PHS HHS HHSN272200900055C
6 · The paper itself

Abstract

Chikungunya virus (CHIKV) is a mosquito-transmitted alphavirus that causes severe acute and chronic disease in humans. Although highly inhibitory murine and human monoclonal antibodies (mAbs) have been generated, the structural basis of their neutralizing activity remains poorly characterized. Here, we determined the cryo-EM structures of chikungunya virus-like particles complexed with antibody fragments (Fab) of two highly protective human mAbs, 4J21 and 5M16, that block virus fusion with host membranes. Both mAbs bind primarily to sites within the A and B domains, as well as to the B domain's β-ribbon connector of the viral glycoprotein E2. The footprints of these antibodies on the viral surface were consistent with results from loss-of-binding studies using an alanine scanning mutagenesis-based epitope mapping approach. The Fab fragments stabilized the position of the B domain relative to the virus, particularly for the complex with 5M16. This finding is consistent with a mechanism of neutralization in which anti-CHIKV mAbs that bridge the A and B domains impede movement of the B domain away from the underlying fusion loop on the E1 glycoprotein and therefore block the requisite pH-dependent fusion of viral and host membranes.

Indexed as

Antibodies, MonoclonalAntibodies, NeutralizingChikungunya FeverChikungunya virusCryoelectron MicroscopyHumansProtein ConformationAntibodies, MonoclonalAntibodies, Neutralizingchikungunya virus-antibody complexescryo-electron microscopy structureneutralizing mechanismviral fusion inhibition

Identifiers

PMID26504196
PMCPMC4653152
OpenAlexW2130503888

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.