Evidence map›Paper›PMID 26503817›Full record

ArticleThe pharmacogenomics journal2016

Gene copy number variation analysis reveals dosage-insensitive expression of CYP2E1.

R Tremmel, K Klein, S Winter, E Schaeffeler, U M Zanger

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Article in The pharmacogenomics journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  7. Copy Number Variations in Tilapia Genomes.Marine biotechnology (New York, N.Y.) · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

R TremmelDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany.ORCID 0000-0003-1564-0433
K KleinDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany.
S WinterDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany.
E SchaeffelerDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany.
U M ZangerDr Margarete Fischer-Bosch Institute of Clinical Pharmacology, Stuttgart, Germany.
Dr. Margarete Fischer-Bosch-Institute of Clinical Pharmacology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene copy number variants (CNVs) of CYP2E1 have been described but not functionally characterized. Here we investigated effects of CNVs on hepatic and lymphoblastoid CYP2E1 expression. Using available single-nuleotide polymorphism microarray data and quantitative PCR, CYP2E1 gene duplication and deletion carriers were identified. CYP2E1 mRNA, protein and enzyme activity (chlorzoxazone-6-hydroxylation) phenotypes of CYP2E1 were not associated with gene copy number. Analysis of gene expression in lymphoblastoid cell lines in relation to CNV confirmed this finding in an extrahepatic tissue and for other ethnicities. Further analyses identified a linked haplotype cluster with possible influence on gene expression. In summary, our data suggest a homeostatic, gene dosage-insensitive regulation of CYP2E1 expression by unknown gene dosage compensation mechanisms. This is in striking contrast to well-known structural variations of CYP2A6 and CYP2D6 that have a strong impact on expression and activity. These findings are important in the context of pharmacogenetic prediction.

Indexed as

DNA Copy Number VariationsGene DosagePharmacogenomic VariantsCell LineChlorzoxazoneCytochrome P-450 CYP2E1Databases, GeneticGene DeletionGene DuplicationGene Expression ProfilingGene Expression Regulation, EnzymologicHaplotypesHepatocytesHumansHydroxylationOligonucleotide Array Sequence AnalysisChlorzoxazoneCytochrome P-450 CYP2E1

Identifiers

PMID26503817
OpenAlexW2233215717

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.