Evidence map›Paper›PMID 26503584›Full record

ArticleNature communications2015

Identification of four new susceptibility loci for testicular germ cell tumour.

Kevin Litchfield, Amy Holroyd, Amy Lloyd, Peter Broderick, Jérémie Nsengimana, Rosalind Eeles, Douglas F Easton, Darshna Dudakia, D Timothy Bishop, Alison Reid and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Association Study between Polymorphisms in DNA Methylation-Related Genes and Testicular Germ Cell Tumor Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
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  17. Multifaceted Role of PRDM Proteins in Human Cancer.International journal of molecular sciences · 2020
    Review
  18. Genetics of testicular germ cell tumors.Current opinion in urology · 2019
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kevin LitchfieldDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
Amy HolroydDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
Amy LloydDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
Peter BroderickDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.ORCID http://orcid.org/0000-0002-8348-5829
Jérémie NsengimanaSection of Epidemiology and Biostatistics, Leeds Institute of Cancer and Pathology, Leeds LS9 7TF, UK.
Rosalind EelesDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
Douglas F EastonCancer Research UK, Genetic Epidemiology Unit, Strangeways Research Laboratory, Cambridge CB1 8RN, UK.
Darshna DudakiaDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
D Timothy BishopSection of Epidemiology and Biostatistics, Leeds Institute of Cancer and Pathology, Leeds LS9 7TF, UK.ORCID http://orcid.org/0000-0002-8752-8785
Alison ReidAcademic Radiotherapy Unit, Institute of Cancer Research, Sutton, Surrey SM2 5NG, UK.
Robert A HuddartAcademic Radiotherapy Unit, Institute of Cancer Research, Sutton, Surrey SM2 5NG, UK.
Tom GrotmolDepartment of Research, Cancer Registry of Norway, 0369 Oslo, Norway.
Fredrik WiklundDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, 171 77 Stockholm, Sweden.
Janet ShipleyDivisions of Molecular Pathology and Cancer Therapeutics, The Institute of Cancer Research, London SM2 5NG, UK.
Richard S HoulstonDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.
Clare TurnbullDivision of Genetics and Epidemiology, The Institute of Cancer Research, London SM2 5NG, UK.

Funding

Cancer Research UK 10589Cancer Research UK 15007Cancer Research UK 15116Cancer Research UK 17528Cancer Research UK 19167Medical Research Council MR/L01629X/1Wellcome Trust
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified multiple risk loci for testicular germ cell tumour (TGCT), revealing a polygenic model of disease susceptibility strongly influenced by common variation. To identify additional single-nucleotide polymorphisms (SNPs) associated with TGCT, we conducted a multistage GWAS with a combined data set of >25,000 individuals (6,059 cases and 19,094 controls). We identified new risk loci for TGCT at 3q23 (rs11705932, TFDP2, P=1.5 × 10(-9)), 11q14.1 (rs7107174, GAB2, P=9.7 × 10(-11)), 16p13.13 (rs4561483, GSPT1, P=1.6 × 10(-8)) and 16q24.2 (rs55637647, ZFPM1, P=3.4 × 10(-9)). We additionally present detailed functional analysis of these loci, identifying a statistically significant relationship between rs4561483 risk genotype and increased GSPT1 expression in TGCT patient samples. These findings provide additional support for a polygenic model of TGCT risk and further insight into the biological basis of disease development.

Indexed as

Genetic Predisposition to DiseaseAdaptor Proteins, Signal TransducingAdultAgedCohort StudiesDNA-Binding ProteinsGenome-Wide Association StudyGenotypeHumansMaleMiddle AgedNeoplasms, Germ Cell and EmbryonalNuclear ProteinsPeptide Termination FactorsPolymorphism, Single NucleotideTesticular NeoplasmsAdaptor Proteins, Signal TransducingDNA-Binding ProteinsGAB2 protein, humanNuclear Proteinspeptide-chain-release factor 3Peptide Termination FactorsTFDP2 protein, humanTranscription FactorsZFPM1 protein, human

Identifiers

PMID26503584
PMCPMC4846317

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.