Evidence map›Paper›PMID 26503529›Full record

ArticleBMC infectious diseases2015

Clinical, molecular and drug sensitivity pattern of mycobacterial isolates from extra-pulmonary tuberculosis cases in Addis Ababa, Ethiopia.

Workneh Korma, Adane Mihret, Jemal Hussien, Richard Anthony, Mekuria Lakew, Abraham Aseffa

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 4 pooled it
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 4 syntheses or guidelines pooled it, 23 citations in OpenAlex.

  1. Pooled it
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  4. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Workneh KormaInstitute of Biotechnology, Addis Ababa University, P.O. Box 62720, Addis Ababa, Ethiopia. Workneh.korma@aau.edu.et.
Adane MihretArmauer Hansen Research Institute, P.O.Box 1105, Addis Ababa, Ethiopia. Adane_mihret@yahoo.com.
Jemal HussienArmauer Hansen Research Institute, P.O.Box 1105, Addis Ababa, Ethiopia. jemaldr@gmail.com.
Richard AnthonyRoyal Tropical Institute, Meibergdreef 39, 1105 AZ, Amsterdam, The Netherlands. r.anthony@kit.nl.
Mekuria LakewDepartment of Microbial, Cellular and Molecular, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia. Yibza2002@yahoo.com.
Abraham AseffaArmauer Hansen Research Institute, P.O.Box 1105, Addis Ababa, Ethiopia. aseffaa@gmail.com.
Armauer Hansen Research Institute · ETAddis Ababa Science and Technology University · ETRoyal Tropical Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn conjunction with the spread of HIV infection, tuberculosis (TB) remains a major cause of illness and death worldwide. The Ethiopian national report reveals that extra pulmonary tuberculosis is on the rise and that case detection rate is exceeding that of smear positive or negative cases in many parts of the country. Different studies indicated that host and/or pathogen related factors are associated with the rise of extra pulmonary cases. However, the reason for this is not clearly known in our setting.

methodsSpecimens were taken from clinically suspected extra pulmonary patients and confirmed by cytology, histopathology and culture. Deletion typing and Spoligotyping was utilized to identify the strains. The isolates were then assigned to lineage using conformal Bayesian network (rules model) algorithm and dendrograms were drawn using UPGMA methods. In addition, drug sensitivity test was done using the indirect proportion and 24 well plate methods.

resultsOut of the 200 clinically suspected extra pulmonary tuberculosis patients, 106 (53 %) were between 15 and 35 years of age and 167 (83.5 %) were new while 33 (16.5 %) were retreatment cases. The culture yield was 29.5 % (59). Of these only one was M. bovis and 58 were M. tuberculosis strains with 31 different spoligotype patterns grouped into seven clusters. The largest cluster (ST53) comprised 12 (20.3 %) isolates. There was higher clustering of CAS isolates in TBLN than in any other form of extra pulmonary tuberculosis cases. Resistance to rifampicin was higher (22 %) than that for INH, STM and EMB (8.1 %, 5 % and 3 % respectively). Out of the 37 isolates tested for resistance, only 2 isolates were resistant for both STM and INH and no MDR strain was found.

conclusionsThere is an ongoing active recent transmission among extra pulmonary tuberculosis in the study areas as shown by the presence of clusters. Although no MDR case was observed, there is a risk of emergence of MDR as noted from the high proportion of resistance to rifampicin. Detailed study at population level is recommended to monitor its trend.

Indexed as

AdolescentAdultAgedAntitubercular AgentsChildChild, PreschoolCoinfectionDrug Resistance, BacterialEthiopiaFemaleHIV InfectionsHumansInfantMaleMicrobial Sensitivity TestsMiddle AgedAntitubercular AgentsRifampin

Identifiers

PMID26503529
PMCPMC4623242
OpenAlexW2095717171

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.