Evidence map›Paper›PMID 26502338›Full record

ArticleNature genetics2015

Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.

James Bentham, David L Morris, Deborah S Cunninghame Graham, Christopher L Pinder, Philip Tombleson, Timothy W Behrens, Javier Martín, Benjamin P Fairfax, Julian C Knight, Lingyan Chen and 8 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 619 papers, 17 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
619citing papers in PubMed, 17 pooled it
55.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

619 citing papers in PubMed, 17 syntheses or guidelines pooled it, 1,060 citations in OpenAlex.

  1. Pooled it
  2. Genome-wide meta-analysis with 1,590,596 individuals identifies 12 novel risk loci for systemic lupus erythematosus.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
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559 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 5 countries.

James Bentham *Division of Genetics and Molecular Medicine, King's College London, UK.
David L Morris *Division of Genetics and Molecular Medicine, King's College London, UK.
Deborah S Cunninghame GrahamDivision of Genetics and Molecular Medicine, King's College London, UK.
Christopher L PinderDivision of Genetics and Molecular Medicine, King's College London, UK.
Philip TomblesonDivision of Genetics and Molecular Medicine, King's College London, UK.
Timothy W BehrensGenentech, Inc., South San Francisco, California, USA.
Javier MartínInstituto de Parasitología y Biomedicina López Neyra, CSIC, Granada, Spain.
Benjamin P FairfaxWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Julian C KnightWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Lingyan ChenDivision of Genetics and Molecular Medicine, King's College London, UK.
Joseph ReplogleHarvard Medical School, Boston, Massachusetts, USA.
Ann-Christine SyvänenDepartment of Medical Sciences, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Lars RönnblomDepartment of Medical Sciences, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Robert R GrahamGenentech, Inc., South San Francisco, California, USA.
Joan E WitherToronto Western Research Institute (TWRI), University Health Network, Toronto, Ontario, Canada.
John D RiouxUniversité de Montréal, Montreal, Quebec, Canada.
Marta E Alarcón-RiquelmeCentro de Genómica e Investigación Oncológica (GENYO), Pfizer-Universidad de Granada-Junta de Andalucía, Granada, Spain.
Timothy J VyseDivision of Genetics and Molecular Medicine, King's College London, UK.
King's College London · GBCentre for Human Genetics · GBUppsala University · SEConsejo Superior de Investigaciones Científicas · ESHarvard University · USMontreal Heart Institute · CAPfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research · ESUniversity Health Network · CA

Funding

HRS Yrs29-34: Y33 SSA CoFundingU01AG009740 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jessica Faul, KENNETH M LANGA · 1990 to 2026
$555.8M
Targeting the p53 pathway for reversal of oral premalignancyP50CA097007 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MYERS, JEFFREY NICHOLAS · 2002 to 2012
$26.1M
UT M.D. Anderson Cancer Center SPORE in MelanomaP50CA093459 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GRIMM, ELIZABETH A · 2004 to 2014
$23.7M
Creating a National Resource for Genetic Research in Behavioral & Health SciencesRC2AG036495 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEIR, DAVID R. · 2009 to 2010
$7.4M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Molecular Epidemiology of Head and Neck CancerR01ES011740 · NIEHS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2001 to 2012
$6.3M
Expanding a National Resource for Genetic Research in Behavioral & Health ScienceRC4AG039029 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEIR, DAVID R. · 2010 to 2010
$6.0M
MOLECULAR GENETIC STUDY OF VONWILLEBRAND FACTORR37HL039693 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GINSBURG, DAVID · 2001 to 2010
$3.7M
Statistical Methods for Gene Environment Interactions In Lung CancerR01CA133996 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I. · 2007 to 2009
$790k
Arthritis Research UK 19289CIHR 94825Howard Hughes Medical InstituteNCI NIH HHS 3P50CA093459NCI NIH HHS 5P50CA097007NCI NIH HHS 5R01CA133996NCI NIH HHS P50 CA093459NCI NIH HHS P50 CA097007NCI NIH HHS R01 CA133996NHGRI NIH HHS U01 HG004446NHGRI NIH HHS U01HG004446NHLBI NIH HHS R37 HL039693NHLBI NIH HHS R37HL039693NIA NIH HHS RC2 AG036495NIA NIH HHS RC2AG036495NIA NIH HHS RC4 AG039029NIA NIH HHS RC4AG039029NIA NIH HHS U01 AG009740NIA NIH HHS U01AG009740NIEHS NIH HHS 5R01ES011740NIEHS NIH HHS R01 ES011740Versus Arthritis 19289Wellcome Trust 051276Wellcome Trust 085492
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE) is a genetically complex autoimmune disease characterized by loss of immune tolerance to nuclear and cell surface antigens. Previous genome-wide association studies (GWAS) had modest sample sizes, reducing their scope and reliability. Our study comprised 7,219 cases and 15,991 controls of European ancestry, constituting a new GWAS, a meta-analysis with a published GWAS and a replication study. We have mapped 43 susceptibility loci, including ten new associations. Assisted by dense genome coverage, imputation provided evidence for missense variants underpinning associations in eight genes. Other likely causal genes were established by examining associated alleles for cis-acting eQTL effects in a range of ex vivo immune cells. We found an over-representation (n = 16) of transcription factors among SLE susceptibility genes. This finding supports the view that aberrantly regulated gene expression networks in multiple cell types in both the innate and adaptive immune response contribute to the risk of developing SLE.

Indexed as

Gene Expression RegulationGenetic Association StudiesAdaptive ImmunityCase-Control StudiesGenetic LociGenetic MarkersGenetic Predisposition to DiseaseHumansImmunity, InnateLupus Erythematosus, SystemicMeta-Analysis as TopicPolymorphism, Single NucleotideRisk FactorsGenetic Markers

Identifiers

PMID26502338
PMCPMC4668589
OpenAlexW2163749231

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.