Evidence map›Paper›PMID 26501415›Full record

ArticleInvestigative ophthalmology & visual science2015

Rare Variants in the Functional Domains of Complement Factor H Are Associated With Age-Related Macular Degeneration.

Michael P Triebwasser, Elisha D O Roberson, Yi Yu, Elizabeth C Schramm, Erin K Wagner, Soumya Raychaudhuri, Johanna M Seddon, John P Atkinson

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Article
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  7. Article
  8. Review
  9. Article
  10. Rare DysfunctionalOphthalmology science · 2023
    Article
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  13. Article
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  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Functional Analysis of Rare Genetic Variants in Complement Factor I (Translational vision science & technology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Michael P TriebwasserWashington University School of Medicine Department of Internal Medicine, Division of Rheumatology, St. Louis, Missouri, United States.
Elisha D O RobersonWashington University School of Medicine Department of Internal Medicine, Division of Rheumatology, St. Louis, Missouri, United States 2Washington University School of Medicine, Department of Genetics, St. Louis, Missouri, United States.
Yi YuOphthalmic Epidemiology and Genetics Service, New England Eye Center, Tufts Medical Center, Boston, Massachusetts, United States.
Elizabeth C SchrammWashington University School of Medicine Department of Internal Medicine, Division of Rheumatology, St. Louis, Missouri, United States.
Erin K WagnerOphthalmic Epidemiology and Genetics Service, New England Eye Center, Tufts Medical Center, Boston, Massachusetts, United States 4Department of Ophthalmology, Tufts University School of Medicine, Sackler School of Graduate Medical Sciences, Tufts Universi.
Soumya RaychaudhuriOphthalmic Epidemiology and Genetics Service, New England Eye Center, Tufts Medical Center, Boston, Massachusetts, United States 4Department of Ophthalmology, Tufts University School of Medicine, Sackler School of Graduate Medical Sciences, Tufts Universi.
Johanna M SeddonOphthalmic Epidemiology and Genetics Service, New England Eye Center, Tufts Medical Center, Boston, Massachusetts, United States 4Department of Ophthalmology, Tufts University School of Medicine, Sackler School of Graduate Medical Sciences, Tufts Universi.
John P AtkinsonWashington University School of Medicine Department of Internal Medicine, Division of Rheumatology, St. Louis, Missouri, United States.
Tufts Medical Center · USWashington University in St. Louis · US

Funding

Center for Integrated Approaches to Undiagnosed DiseasesU01HG007690 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI LOSCALZO, JOSEPH · 2014 to 2022
$10.4M
ETIOLOGIC STUDIES OF AGE-RELATED MACULAR DEGENERATIONR01EY011309 · NEI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SEDDON, JOHANNA M · 2003 to 2017
$9.3M
Viral Discovery in Rheumatoid ArthritisP30AR048335 · NIAMS · WASHINGTON UNIVERSITY · PI HSIEH, CHYI S · 2001 to 2015
$8.9M
Translational Research Skills Development CoreU54HL112303 · NHLBI · WASHINGTON UNIVERSITY · PI SADLER, J EVAN · 2012 to 2016
$8.8M
Genetic predictors of response to anti-TNF therapy in rheumatoid arthritisU01GM092691 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI BRENNER, MICHAEL B., RAYCHAUDHURI, SOUMYA · 2010 to 2014
$7.5M
Discovery and Functional Impact of Common and Rare Variants in RAR01AR063759 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Soumya Raychaudhuri · 2013 to 2026
$5.4M
Complement Receptor One (CRI): Structure/FunctionR01AI041592 · NIAID · WASHINGTON UNIVERSITY · PI ATKINSON, JOHN · 1997 to 2013
$3.9M
The Role of Complement in the Pathogenesis of PreeclampsiaF30HL103072 · NHLBI · WASHINGTON UNIVERSITY · PI TRIEBWASSER, MICHAEL PAUL · 2010 to 2013
$147k
NEI NIH HHS R01 EY011309NEI NIH HHS R01-EY11309NHGRI NIH HHS 1U01HG007690-01NHGRI NIH HHS U01 HG007690NHLBI NIH HHS F30 HL103072NHLBI NIH HHS F30HL103072NHLBI NIH HHS U54 HL112303NIAID NIH HHS R01 AI041592NIAID NIH HHS R01-AI041592NIAMS NIH HHS 1R01AR063759-01A1NIAMS NIH HHS P30 AR048335NIAMS NIH HHS P30 AR48335NIAMS NIH HHS R01 AR063759NIGMS NIH HHS 5U01GM092691-04NIGMS NIH HHS U01 GM092691
6 · The paper itself

Abstract

purposeAge-related macular degeneration (AMD) has a substantial genetic risk component, as evidenced by the risk from common genetic variants uncovered in the first genome-wide association studies. More recently, it has become apparent that rare genetic variants also play an independent role in AMD risk. We sought to determine if rare variants in complement factor H (CFH) played a role in AMD risk.

methodsWe had previously collected DNA from a large population of patients with advanced age-related macular degeneration (A-AMD) and controls for targeted deep sequencing of candidate AMD risk genes. In this analysis, we tested for an increased burden of rare variants in CFH in 1665 cases and 752 controls from this cohort.

resultsWe identified 65 missense, nonsense, or splice-site mutations with a minor allele frequency ≤ 1%. Rare variants with minor allele frequency ≤ 1% (odds ratio [OR] = 1.5, P = 4.4 × 10⁻²), 0.5% (OR = 1.6, P = 2.6 × 10⁻²), and all singletons (OR = 2.3, P = 3.3 × 10⁻²) were enriched in A-AMD cases. Moreover, we observed loss-of-function rare variants (nonsense, splice-site, and loss of a conserved cysteine) in 10 cases and serum levels of FH were decreased in all 5 with an available sample (haploinsufficiency). Further, rare variants in the major functional domains of CFH were increased in cases (OR = 3.2; P = 1.4 × 10⁻³) and the magnitude of the effect correlated with the disruptive nature of the variant, location in an active site, and inversely with minor allele frequency.

conclusionsIn this large A-AMD cohort, rare variants in the CFH gene were enriched and tended to be located in functional sites or led to low serum levels. These data, combined with those indicating a similar, but even more striking, increase in rare variants found in CFI, strongly implicate complement activation in A-AMD etiopathogenesis as CFH and CFI interact to inhibit the alternative pathway.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationAgedCodon, NonsenseComplement Factor HGene FrequencyGenetic Association StudiesHumansMacular DegenerationMutation, MissensePolymorphism, Single NucleotideRisk FactorsCFH protein, humanCodon, NonsenseComplement Factor H

Identifiers

PMID26501415
PMCPMC4627248
OpenAlexW2399087400

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.