Evidence map›Paper›PMID 26500717›Full record

ArticleStandards in genomic sciences2015

Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park.

Phillip Brumm, Miriam L Land, Loren J Hauser, Cynthia D Jeffries, Yun-Juan Chang, David A Mead

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Thermophile Lytic Enzyme Fusion Proteins that TargetAntibiotics (Basel, Switzerland) · 2019
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  5. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Phillip BrummC5•6 Technologies Inc., Middleton, WI USA.
Miriam L LandOak Ridge National Laboratory, Oak Ridge, TN USA.
Loren J HauserOak Ridge National Laboratory, Oak Ridge, TN USA.
Cynthia D JeffriesBioscience Division, Los Alamos National Laboratory, Los Alamos, NM USA.
Yun-Juan ChangBioscience Division, Los Alamos National Laboratory, Los Alamos, NM USA.
David A MeadLucigen Corporation, Middleton, WI USA.
Los Alamos National Laboratory · USOak Ridge National Laboratory · USC5•6 Technologies (United States) · USLucigen Corporation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Geobacillus sp. Y412MC52 was isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2011 (CP002835). Based on 16S rRNA genes and average nucleotide identity, Geobacillus sp. Y412MC52 and the related Geobacillus sp. Y412MC61 appear to be members of a new species of Geobacillus. The genome of Geobacillus sp. Y412MC52 consists of one circular chromosome of 3,628,883 bp, an average G + C content of 52 % and one circular plasmid of 45,057 bp and an average G + C content of 45 %. Y412MC52 possesses arabinan, arabinoglucuronoxylan, and aromatic acid degradation clusters for degradation of hemicellulose from biomass. Transport and utilization clusters are also present for other carbohydrates including starch, cellobiose, and α- and β-galactooligosaccharides.

Indexed as

ArabinanBiomassGeobacillus sp. Y412MC52G. thermocatenulatusObsidian hot springXylan

Identifiers

PMID26500717
PMCPMC4617443
OpenAlexW2104782311

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.