Evidence map›Paper›PMID 26500702›Full record

ArticleEpigenetics & chromatin2015

The histone chaperone DAXX maintains the structural organization of heterochromatin domains.

Lindsy M Rapkin, Kashif Ahmed, Stanimir Dulev, Ren Li, Hiroshi Kimura, Alexander M Ishov, David P Bazett-Jones

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Lindsy M RapkinProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON M5G 0A4 Canada ; Department of Biochemistry, The University of Toronto, Toronto, ON M5S 1A8 Canada.
Kashif AhmedProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON M5G 0A4 Canada.
Stanimir DulevProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON M5G 0A4 Canada.
Ren LiProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON M5G 0A4 Canada.
Hiroshi KimuraGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-Ku, Yokohama 226-8501 Japan.
Alexander M IshovDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, and University of Florida Cancer Center, Gainesville, FL 32610 USA.
David P Bazett-JonesProgram in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON M5G 0A4 Canada ; Department of Biochemistry, The University of Toronto, Toronto, ON M5S 1A8 Canada.
Hospital for Sick Children · CAUniversity of Toronto · CATokyo Institute of Technology · JPUniversity of Florida Health · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe death domain-associated protein (DAXX) collaborates with accessory proteins to deposit the histone variant H3.3 into mouse telomeric and pericentromeric repeat DNA. Pericentromeric repeats are the main genetic contributor to spatially discrete, compact, constitutive heterochromatic structures called chromocentres. Chromocentres are enriched in the H3K9me3 histone modification and serve as integral, functionally important components of nuclear organization. To date, the role of DAXX as an H3.3-specific histone chaperone has been investigated primarily using biochemical approaches which provide genome-wide views on cell populations and information on changes in local chromatin structures. However, the global chromatin and subnuclear reorganization events that coincide with these changes remain to be investigated.

resultsUsing electron spectroscopic imagine (ESI), a specialized form of energy-filtered transmission electron microscopy that allows us to visualize chromatin domains in situ with high contrast and spatial resolution, we show that in the absence of DAXX, H3K9me3-enriched domains are structurally altered and become uncoupled from major satellite DNA. In addition, the structural integrity of nucleoli and the organization of ribosomal DNA (rDNA) are disrupted. Moreover, the absence of DAXX leads to chromatin that is more sensitive, on a global level, to micrococcal nuclease digestion.

conclusionsWe identify a novel role of DAXX as a major regulator of subnuclear organization through the maintenance of the global heterochromatin structural landscape. As well, we show, for the first time, that the loss of a histone chaperone can have severe consequences for global nuclear organization.

Indexed as

ChromocentresDAXXElectron spectroscopic imagingHeterochromatinNuclear organization

Identifiers

PMID26500702
PMCPMC4617904
OpenAlexW1843747001

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.