Evidence map›Paper›PMID 26500695›Full record

ArticleBiotechnology for biofuels2015

Inducible gene expression system by 3-hydroxypropionic acid.

Shengfang Zhou, Satish Kumar Ainala, Eunhee Seol, Trinh Thi Nguyen, Sunghoon Park

Abstract read
In one paragraph

Article in Biotechnology for biofuels, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Levulinic Acid-Inducible and Tunable Gene Expression System forFrontiers in bioengineering and biotechnology · 2021
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. In vivo biosensors: mechanisms, development, and applications.Journal of industrial microbiology & biotechnology · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shengfang Zhou *School of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangeon-dong, Geumjeong-gu, Busan, 609-735 Republic of Korea.
Satish Kumar Ainala *School of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangeon-dong, Geumjeong-gu, Busan, 609-735 Republic of Korea.
Eunhee SeolSchool of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangeon-dong, Geumjeong-gu, Busan, 609-735 Republic of Korea.
Trinh Thi NguyenSchool of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangeon-dong, Geumjeong-gu, Busan, 609-735 Republic of Korea.
Sunghoon ParkSchool of Chemical and Biomolecular Engineering, Pusan National University, San 30 Jangeon-dong, Geumjeong-gu, Busan, 609-735 Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background3-Hydroxypropionic acid (3-HP) is an important platform chemical that boasts a variety of industrial applications. Gene expression systems inducible by 3-HP, if available, are of great utility for optimization of the pathways of 3-HP production and excretion.

resultsHere we report the presence of unique inducible gene expression systems in Pseudomonas denitrificans and other microorganisms. In P. denitrificans, transcription of three genes (hpdH, mmsA and hbdH-4) involved in 3-HP degradation was upregulated by 3-HP by the action of a transcriptional regulator protein, LysR, and a cis-acting regulatory site for LysR binding. Similar inducible systems having an LysR transcriptional regulator were identified in other microorganisms that also could degrade 3-HP. A docking study showed that the 3-HP binding pocket is located between the N-terminal helix-turn-helix motif and the C-terminal cofactor-binding domain.

conclusionsThis LysR-regulated 3-HP-inducible system should prove useful for control of the level of gene expression in response to 3-HP.

Indexed as

3-Hydroxypropionic acidhbdHhpdHInducibleLysRmmsA

Identifiers

PMID26500695
PMCPMC4617489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.