ArticleFrontiers in plant science2015
Transcriptome analysis of Ginkgo biloba kernels.
Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 38 citations in OpenAlex.
- De novo transcriptome assembly and gene expression analysis of Cnidium officinale under high-temperature conditions.BMC genomics · 2025Article
- Identification of a central regulator of ginkgolide biosynthesis inProceedings of the National Academy of Sciences of the United States of America · 2025Article
- Evaluation of Different SNP Analysis Software and Optimal Mining Process in Tree Species.Life (Basel, Switzerland) · 2023Article
- Novel mechanisms for the synthesis of important secondary metabolites inFrontiers in plant science · 2023Article
- Systematic Identification and Expression Analysis of the Auxin Response Factor (ARF) Gene Family inInternational journal of molecular sciences · 2022Article
- Biflavonoids: Important Contributions to the Health Benefits of Ginkgo (Plants (Basel, Switzerland) · 2022Review
- Genome-Wide Identification of the Ginkgo (International journal of molecular sciences · 2022Article
- Biosyntheses characterization of alkaloids and flavonoids in Sophora flavescens by combining metabolome and transcriptome.Scientific reports · 2021Article
- Extracellular vesicles isolated by size-exclusion chromatography present suitability for RNomics analysis in plasma.Journal of translational medicine · 2021Article
- Physiological and transcriptome analyses of photosynthesis and chlorophyll metabolism in variegated Citrus (Shiranuhi and Huangguogan) seedlings.Scientific reports · 2019Article
- Article
- A Novel AP2/ERF Transcription Factor CR1 Regulates the Accumulation of Vindoline and Serpentine inFrontiers in plant science · 2017Article
- Combining Metabolic Profiling and Gene Expression Analysis to Reveal the Biosynthesis Site and Transport of Ginkgolides inFrontiers in plant science · 2017Article
- Draft genome of the living fossil Ginkgo biloba.GigaScience · 2016Article
- Analysis of codon usage patterns in Ginkgo biloba reveals codon usage tendency from A/U-ending to G/C-ending.Scientific reports · 2016Article
- De Novo Sequencing and Assembly Analysis of the Pseudostellaria heterophylla Transcriptome.PloS one · 2016Article
- Transcriptome Profile Analysis from Different Sex Types of Ginkgo biloba L.Frontiers in plant science · 2016Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Ginkgo biloba is a dioecious species native to China with medicinally and phylogenetically important characteristics; however, genomic resources for this species are limited. In this study, we performed the first transcriptome sequencing for Ginkgo kernels at five time points using Illumina paired-end sequencing. Approximately 25.08-Gb clean reads were obtained, and 68,547 unigenes with an average length of 870 bp were generated by de novo assembly. Of these unigenes, 29,987 (43.74%) were annotated in publicly available plant protein database. A total of 3,869 genes were identified as significantly differentially expressed, and enrichment analysis was conducted at different time points. Furthermore, metabolic pathway analysis revealed that 66 unigenes were responsible for terpenoid backbone biosynthesis, with up to 12 up-regulated unigenes involved in the biosynthesis of ginkgolide and bilobalide. Differential gene expression analysis together with real-time PCR experiments indicated that the synthesis of bilobalide may have interfered with the ginkgolide synthesis process in the kernel. These data can remarkably expand the existing transcriptome resources of Ginkgo, and provide a valuable platform to reveal more on developmental and metabolic mechanisms of this species.
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