Evidence map›Paper›PMID 26500639›Full record

ArticleFrontiers in microbiology2015

Rapid detection of Pseudomonas aeruginosa targeting the toxA gene in intensive care unit patients from Beijing, China.

Derong Dong, Dayang Zou, Hui Liu, Zhan Yang, Simo Huang, Ningwei Liu, Xiaoming He, Wei Liu, Liuyu Huang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
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  6. Review
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  9. Juglone InactivatesMolecules (Basel, Switzerland) · 2021
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  10. Characterisation of the Prevailing MultidrugThe Malaysian journal of medical sciences : MJMS · 2021
    Article
  11. Article
  12. Article
  13. International journal of molecular sciences · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Derong DongInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Dayang ZouInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Hui LiuDepartment of Digestive System, The Second Affiliated Hospital of Dalian Medical University Dalian, China.
Zhan YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Simo HuangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Ningwei LiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Xiaoming HeInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Wei LiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Liuyu HuangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences Beijing, China.
Academy of Military Medical Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas aeruginosa is a major opportunistic pathogen in hospital-acquired infections and exhibits increasing antibiotic resistance. A rapid and sensitive molecular method for its detection in clinical samples is needed to guide therapeutic treatment and to control P. aeruginosa outbreaks. In this study, we established a polymerase spiral reaction (PSR) method for rapid detection of P. aeruginosa by targeting the toxA gene, which regulates exotoxin A synthesis. Real-time turbidity monitoring and a chromogenic visualization using hydroxynaphthol blue were used to assess the reaction. All 17 non- P. aeruginosa strains tested negative, indicating the high specificity of the PSR primers. The detection limit was 2.3 pg/μl within 60 min at isothermal temperature (65°C), 10-fold more sensitive than conventional PCR. Then, the PSR assay was applied to a clinical surveillance of P. aeruginosa in three top hospitals in Beijing, China. Of the 130 sputum samples collected from ICU patients with suspected multi-resistant infections, 37 P. aeruginosa isolates were identified from the positive samples. All clinical strains belonged to 10 different P. aeruginosa multilocus sequence typing groups and exhibited high resistance to carbapenems, cephalosporins, and aminoglycosides. Interestingly, of the 33 imipenem-resistant isolates, 30 (90.9%) had lost the outer membrane porin oprD gene. Moreover, isolate SY-95, containing multiple antibiotic resistance genes, possessed the ability to hydrolyze all antibiotics used in clinic and was susceptible only to polymyxin B. Our study showed the high level of antibiotic resistance and co-occurrence of resistance genes in the clinical strains, indicating a rapid and continuing evolution of P. aeruginosa. In conclusion, we developed a P. aeruginosa PSR assay, which could be a useful tool for clinical screening, especially in case of poor resources, or for point-of-care testing.

Indexed as

isothermalP. aeruginosaPSRrapid diagnosistoxA

Identifiers

PMID26500639
PMCPMC4594016
OpenAlexW2106534294

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.