Evidence map›Paper›PMID 26500261›Full record

ArticleGenetics2016

The Differences Between Cis- and Trans-Gene Inactivation Caused by Heterochromatin in Drosophila.

Yuriy A Abramov, Aleksei S Shatskikh, Oksana G Maksimenko, Silvia Bonaccorsi, Vladimir A Gvozdev, Sergey A Lavrov

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yuriy A AbramovDepartment of Molecular Genetics of the Cell, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Aleksei S ShatskikhDepartment of Molecular Genetics of the Cell, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Oksana G MaksimenkoInstitute of Gene Biology, Russian Academy of Sciences, Moscow 123182, Russia.
Silvia BonaccorsiDepartment of Biology and Biotechnology "Charles Darwin," Sapienza University of Rome, 00185, Italy.
Vladimir A GvozdevDepartment of Molecular Genetics of the Cell, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia gvozdev@img.ras.ru slavrov@img.ras.ru.
Sergey A LavrovDepartment of Molecular Genetics of the Cell, Institute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia gvozdev@img.ras.ru slavrov@img.ras.ru.
Institute of Molecular Genetics · RUInstitute of Gene Biology · RUSapienza University of Rome · IT

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
NIH HHS P40 OD018537NIH HHS P40-OD018537
6 · The paper itself

Abstract

Position-effect variegation (PEV) is the epigenetic disruption of gene expression near the de novo-formed euchromatin-heterochromatin border. Heterochromatic cis-inactivation may be accompanied by the trans-inactivation of genes on a normal homologous chromosome in trans-heterozygous combination with a PEV-inducing rearrangement. We characterize a new genetic system, inversion In(2)A4, demonstrating cis-acting PEV as well as trans-inactivation of the reporter transgenes on the homologous nonrearranged chromosome. The cis-effect of heterochromatin in the inversion results not only in repression but also in activation of genes, and it varies at different developmental stages. While cis-actions affect only a few juxtaposed genes, trans-inactivation is observed in a 500-kb region and demonstrates а nonuniform pattern of repression with intermingled regions where no transgene repression occurs. There is no repression around the histone gene cluster and in some other euchromatic sites. trans-Inactivation is accompanied by dragging of euchromatic regions into the heterochromatic compartment, but the histone gene cluster, located in the middle of the trans-inactivated region, was shown to be evicted from the heterochromatin. We demonstrate that trans-inactivation is followed by de novo HP1a accumulation in the affected transgene; trans-inactivation is specifically favored by the chromatin remodeler SAYP and prevented by Argonaute AGO2.

Indexed as

Chromosomal Position EffectsGene SilencingGenes, InsectHeterochromatinAnimalsChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneChromosome InversionDrosophilaFemaleGene ExpressionGenes, ReporterHistonesMaleRNA, MessengerTransgenesChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinHistonesRNA, MessengerDrosophilaheterochromatinnuclear compartmentalizationPEVtrans-inactivation

Identifiers

PMID26500261
PMCPMC4701106
OpenAlexW2177212637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.