Evidence map›Paper›PMID 26500104›Full record

ArticleMolecular genetics and genomics : MGG2016

Genome-wide identification and comparative analysis of grafting-responsive mRNA in watermelon grafted onto bottle gourd and squash rootstocks by high-throughput sequencing.

Na Liu, Jinghua Yang, Xinxing Fu, Li Zhang, Kai Tang, Kateta Malangisha Guy, Zhongyuan Hu, Shaogui Guo, Yong Xu, Mingfang Zhang

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Na LiuLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Jinghua YangLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Xinxing FuLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Li ZhangLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Kai TangDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, 47907, USA.
Kateta Malangisha GuyLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Zhongyuan HuLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China.
Shaogui GuoKey Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People's Republic of China.
Yong XuKey Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, People's Republic of China. xuyong@nercv.org.
Mingfang ZhangLaboratory of Genetic Resources and Functional Improvement for Horticultural Plants, Department of Horticulture, Zhejiang University, Hangzhou, 310058, People's Republic of China. mfzhang@zju.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grafting is an important agricultural technique widely used to improve plant growth, yield, and adaptation to either biotic or abiotic stresses. However, the molecular mechanisms underlying grafting-induced physiological processes remain unclear. Watermelon (Citrullus lanatus L.) is an important horticultural crop worldwide. Grafting technique is commonly used in watermelon production for improving its tolerance to stresses, especially to the soil-borne fusarium wilt disease. In the present study, we used high-throughput sequencing to perform a genome-wide transcript analysis of scions from watermelon grafted onto bottle gourd and squash rootstocks. Our transcriptome and digital gene expression (DGE) profiling data provided insights into the molecular aspects of gene regulation in grafted watermelon. Compared with self-grafted watermelon, there were 787 and 3485 genes differentially expressed in watermelon grafted onto bottle gourd and squash rootstocks, respectively. These genes were associated with primary and secondary metabolism, hormone signaling, transcription factors, transporters, and response to stimuli. Grafting led to changes in expression of these genes, suggesting that they may play important roles in mediating the physiological processes of grafted seedlings. The potential roles of the grafting-responsive mRNAs in diverse biological and metabolic processes were discussed. Obviously, the data obtained in this study provide an excellent resource for unraveling the mechanisms of candidate genes function in diverse biological processes and in environmental adaptation in a graft system.

Indexed as

TranscriptomeCitrullusFusariumGene Expression Regulation, PlantGenome, PlantHigh-Throughput Nucleotide SequencingPlant BreedingPlant RootsRNA, MessengerSeedlingsRNA, MessengerGene regulationGraftingRNA-SeqRootstockWatermelon

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.