Evidence map›Paper›PMID 26499891›Full record

ArticleeLife2015

Self-establishing communities enable cooperative metabolite exchange in a eukaryote.

Kate Campbell, Jakob Vowinckel, Michael Mülleder, Silke Malmsheimer, Nicola Lawrence, Enrica Calvani, Leonor Miller-Fleming, Mohammad T Alam, Stefan Christen, Markus A Keller and 1 more

Abstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

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  7. The evolution of autonomy from two cooperative specialists in fluctuating environments.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kate CampbellDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Jakob VowinckelDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Michael MüllederDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Silke MalmsheimerDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Nicola LawrenceThe Wellcome Trust Gurdon Institute, University of Cambridge, Cambridge, United Kingdom.
Enrica CalvaniDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Leonor Miller-FlemingDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Mohammad T AlamDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Stefan ChristenInstitute of Molecular Systems Biology, ETH Zürich, Zurich, Switzerland.
Markus A KellerDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Markus RalserDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0001-9535-7413

Funding

Wellcome Trust
6 · The paper itself

Abstract

Metabolite exchange among co-growing cells is frequent by nature, however, is not necessarily occurring at growth-relevant quantities indicative of non-cell-autonomous metabolic function. Complementary auxotrophs of Saccharomyces cerevisiae amino acid and nucleotide metabolism regularly fail to compensate for each other's deficiencies upon co-culturing, a situation which implied the absence of growth-relevant metabolite exchange interactions. Contrastingly, we find that yeast colonies maintain a rich exometabolome and that cells prefer the uptake of extracellular metabolites over self-synthesis, indicators of ongoing metabolite exchange. We conceived a system that circumvents co-culturing and begins with a self-supporting cell that grows autonomously into a heterogeneous community, only able to survive by exchanging histidine, leucine, uracil, and methionine. Compensating for the progressive loss of prototrophy, self-establishing communities successfully obtained an auxotrophic composition in a nutrition-dependent manner, maintaining a wild-type like exometabolome, growth parameters, and cell viability. Yeast, as a eukaryotic model, thus possesses extensive capacity for growth-relevant metabolite exchange and readily cooperates in metabolism within progressively establishing communities.

Indexed as

Microbial InteractionsAmino AcidsCoculture TechniquesMetabolomeMicrobial ViabilitySaccharomyces cerevisiaeAmino Acidscell biologycellular heterogeneitycomputational biologycooperativitymetabolisms.cerevisaesystems biology

Identifiers

PMID26499891
PMCPMC4695387

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.