Evidence map›Paper›PMID 26499794›Full record

ArticleThe Journal of biological chemistry2015

Utilization of Dioxygen by Carotenoid Cleavage Oxygenases.

Xuewu Sui, Marcin Golczak, Jianye Zhang, Katie A Kleinberg, Johannes von Lintig, Krzysztof Palczewski, Philip D Kiser

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. A structural and functional model for alkene dioxygenases.Journal of inorganic biochemistry · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Aster la vista: Unraveling the biochemical basis of carotenoid homeostasis in the human retina.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
  9. Retinal pigment epithelium 65 kDa protein (RPE65): An update.Progress in retinal and eye research · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Metabolism of Carotenoids in Mammals.Advances in experimental medicine and biology · 2021
    Article
  14. Review
  15. Evolutionary aspects and enzymology of metazoan carotenoid cleavage oxygenases.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  16. The molecular aspects of absorption and metabolism of carotenoids and retinoids in vertebrates.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  17. Carotenoid metabolism at the intestinal barrier.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  18. Structural and mechanistic aspects of carotenoid cleavage dioxygenases (CCDs).Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  19. Structural basis for carotenoid cleavage by an archaeal carotenoid dioxygenase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xuewu SuiFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and.
Marcin GolczakFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and.
Jianye ZhangFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and.
Katie A KleinbergFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and.
Johannes von LintigFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and.
Krzysztof PalczewskiFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and kxp65@case.edu.
Philip D KiserFrom the Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106-4956 and the Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, Ohio 44106 pdk7@case.edu.
Case Western Reserve University · USLouis Stokes Cleveland VA Medical Center · US

Funding

STRUCTURAL STUDIES OF ARRESTINSR01EY009339 · NEI · UNIVERSITY OF WASHINGTON · PI KISER, PHILIP DAVID, PALCZEWSKI, KRZYSZTOF · 1992 to 2025
$16.0M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Carotinoids in VisionR01EY020551 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI VON LINTIG, JOHANNES FRIEDRICH · 2011 to 2024
$4.8M
Regulation of vitamin A metabolism in the eyeR01EY023948 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI GOLCZAK, MARCIN BERNARD · 2014 to 2023
$3.8M
Studies on visual cycles and their relevance to age-related macular degenerationIK2BX002683 · VA · VETERANS HEALTH ADMINISTRATION · PI KISER, PHILIP DAVID · 2015 to 2019
–
BLRD VA IK2 BX002683NEI NIH HHS EY009339NEI NIH HHS EY020551NEI NIH HHS EY023948NEI NIH HHS R01 EY009339NEI NIH HHS R01 EY020551NEI NIH HHS R01 EY023948NIGMS NIH HHS GM103403NIGMS NIH HHS P41 GM103403
6 · The paper itself

Abstract

Carotenoid cleavage oxygenases (CCOs) are non-heme, Fe(II)-dependent enzymes that participate in biologically important metabolic pathways involving carotenoids and apocarotenoids, including retinoids, stilbenes, and related compounds. CCOs typically catalyze the cleavage of non-aromatic double bonds by dioxygen (O2) to form aldehyde or ketone products. Expressed only in vertebrates, the RPE65 sub-group of CCOs catalyzes a non-canonical reaction consisting of concerted ester cleavage and trans-cis isomerization of all-trans-retinyl esters. It remains unclear whether the former group of CCOs functions as mono- or di-oxygenases. Additionally, a potential role for O2 in catalysis by the RPE65 group of CCOs has not been evaluated to date. Here, we investigated the pattern of oxygen incorporation into apocarotenoid products of Synechocystis apocarotenoid oxygenase. Reactions performed in the presence of (18)O-labeled water and (18)O2 revealed an unambiguous dioxygenase pattern of O2 incorporation into the reaction products. Substitution of Ala for Thr at position 136 of apocarotenoid oxygenase, a site predicted to govern the mono- versus dioxygenase tendency of CCOs, greatly reduced enzymatic activity without altering the dioxygenase labeling pattern. Reevaluation of the oxygen-labeling pattern of the resveratrol-cleaving CCO, NOV2, previously reported to be a monooxygenase, using a purified enzyme sample revealed that it too is a dioxygenase. We also demonstrated that bovine RPE65 is not dependent on O2 for its cleavage/isomerase activity. In conjunction with prior research, the results of this study resolve key issues regarding the utilization of O2 by CCOs and indicate that dioxygenase activity is a feature common among double bond-cleaving CCOs.

Indexed as

AnimalsBacterial ProteinsCarotenoidsCattleDioxygenasesIntramolecular OxidoreductasesOxygenResveratrolStilbenesSynechocystisBacterial ProteinsCarotenoidsDioxygenasesIntramolecular OxidoreductasesOxygenResveratrolStilbenescarotenoidenzymeenzyme catalysisenzyme mechanismenzyme structureretinal metabolismretinoidretinol

Identifiers

PMID26499794
PMCPMC4683246
OpenAlexW1870857092

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.