Evidence map›Paper›PMID 26499124›Full record

ArticleExtremophiles : life under extreme conditions2016

A novel thermostable protein-tag: optimization of the Sulfolobus solfataricus DNA- alkyl-transferase by protein engineering.

Antonella Vettone, Mario Serpe, Aurelio Hidalgo, José Berenguer, Giovanni del Monaco, Anna Valenti, Mosé Rossi, Maria Ciaramella, Giuseppe Perugino

Erratum issuedAbstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. A fluorescent reporter system for anaerobic thermophiles.Frontiers in bioengineering and biotechnology · 2023
    Article
  4. First thermostable CLIP-Computational and structural biotechnology journal · 2022
    Article
  5. The SNAP-Journal of enzyme inhibition and medicinal chemistry · 2021
    Article
  6. Article
  7. International journal of molecular sciences · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Every OGT Is Illuminated … by Fluorescent and Synchrotron Lights.International journal of molecular sciences · 2017
    Review
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Antonella VettoneInstitute of Biosciences and BioResources, National Council of Research of Italy, Via P. Castellino 111, 80131 Naples, Italy
Mario Serpe
Aurelio Hidalgo
José Berenguer
Giovanni del Monaco
Anna Valenti
Mosé Rossi
Maria Ciaramella
Giuseppe Perugino
Institute of Biosciences and Bioresources · ITCentro de Biología Molecular Severo Ochoa · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the last decade, a powerful biotechnological tool for the in vivo and in vitro specific labeling of proteins (SNAP-tag™ technology) was proposed as a valid alternative to classical protein-tags (green fluorescent proteins, GFPs). This was made possible by the discovery of the irreversible reaction of the human alkylguanine-DNA-alkyl-transferase (hAGT) in the presence of benzyl-guanine derivatives. However, the mild reaction conditions and the general instability of the mesophilic SNAP-tag™ make this new approach not fully applicable to (hyper-)thermophilic and, in general, extremophilic organisms. Here, we introduce an engineered variant of the thermostable alkylguanine-DNA-alkyl-transferase from the Archaea Sulfolobus solfataricus (SsOGT-H5), which displays a catalytic efficiency comparable to the SNAP-tag™ protein, but showing high intrinsic stability typical of proteins from this organism. The successful heterologous expression obtained in a thermophilic model organism makes SsOGT-H5 a valid candidate as protein-tag for organisms living in extreme environments.

Indexed as

Alkyl and Aryl TransferasesAmino Acid SequenceArchaeal ProteinsDNAEnzyme StabilityHot TemperatureMolecular Sequence DataProtein BindingProtein EngineeringRecombinant Fusion ProteinsSulfolobus solfataricusAlkyl and Aryl TransferasesArchaeal ProteinsDNADNA alkyltransferaseRecombinant Fusion Proteins

Identifiers

PMID26499124
OpenAlexW4245071093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.