Evidence map›Paper›PMID 26497456›Full record

ArticleApplied and environmental microbiology2016

Inhibitory Role of Greatwall-Like Protein Kinase Rim15p in Alcoholic Fermentation via Upregulating the UDP-Glucose Synthesis Pathway in Saccharomyces cerevisiae.

Daisuke Watanabe, Yan Zhou, Aiko Hirata, Yukiko Sugimoto, Kenichi Takagi, Takeshi Akao, Yoshikazu Ohya, Hiroshi Takagi, Hitoshi Shimoi

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 41 citations in OpenAlex.

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  9. Precursor Quantitation Methods for Next Generation Food Production.Frontiers in bioengineering and biotechnology · 2022
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  11. Nutrient Signaling via the TORC1-Greatwall-PP2AApplied and environmental microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Daisuke WatanabeGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan National Research Institute of Brewing, Higashihiroshima, Hiroshima, Japan.
Yan ZhouNational Research Institute of Brewing, Higashihiroshima, Hiroshima, Japan.
Aiko HirataDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, Japan.
Yukiko SugimotoGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Kenichi TakagiGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Takeshi AkaoNational Research Institute of Brewing, Higashihiroshima, Hiroshima, Japan.
Yoshikazu OhyaDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba, Japan.
Hiroshi TakagiGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.
Hitoshi ShimoiNational Research Institute of Brewing, Higashihiroshima, Hiroshima, Japan Faculty of Agriculture, Iwate University, Morioka, Iwate, Japan simoi@iwate-u.ac.jp.
National Research Institute of Brewing · JPNara Institute of Science and Technology · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The high fermentation rate of Saccharomyces cerevisiae sake yeast strains is attributable to a loss-of-function mutation in the RIM15 gene, which encodes a Greatwall-family protein kinase that is conserved among eukaryotes. In the present study, we performed intracellular metabolic profiling analysis and revealed that deletion of the RIM15 gene in a laboratory strain impaired glucose-anabolic pathways through the synthesis of UDP-glucose (UDPG). Although Rim15p is required for the synthesis of trehalose and glycogen from UDPG upon entry of cells into the quiescent state, we found that Rim15p is also essential for the accumulation of cell wall β-glucans, which are also anabolic products of UDPG. Furthermore, the impairment of UDPG or 1,3-β-glucan synthesis contributed to an increase in the fermentation rate. Transcriptional induction of PGM2 (phosphoglucomutase) and UGP1 (UDPG pyrophosphorylase) was impaired in Rim15p-deficient cells in the early stage of fermentation. These findings demonstrate that the decreased anabolism of glucose into UDPG and 1,3-β-glucan triggered by a defect in the Rim15p-mediated upregulation of PGM2 and UGP1 redirects the glucose flux into glycolysis. Consistent with this, sake yeast strains with defective Rim15p exhibited impaired expression of PGM2 and UGP1 and decreased levels of β-glucans, trehalose, and glycogen during sake fermentation. We also identified a sake yeast-specific mutation in the glycogen synthesis-associated glycogenin gene GLG2, supporting the conclusion that the glucose-anabolic pathway is impaired in sake yeast. These findings demonstrate that downregulation of the UDPG synthesis pathway is a key mechanism accelerating alcoholic fermentation in industrially utilized S. cerevisiae sake strains.

Indexed as

FermentationAlcoholic Beveragesbeta-GlucansBiosynthetic PathwaysCell WallDown-RegulationEthanolGlucoseGlycogenProtein KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrehaloseUp-RegulationUridine Diphosphate GlucoseUTP-Glucose-1-Phosphate Uridylyltransferasebeta-1,3-glucanbeta-GlucansEthanolGlucoseGlycogenProtein KinasesSaccharomyces cerevisiae ProteinsTrehaloseUridine Diphosphate GlucoseUTP-Glucose-1-Phosphate Uridylyltransferase

Identifiers

PMID26497456
PMCPMC4702617
OpenAlexW2213057115

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.