ReviewNatural product reports2016
Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks.
Review in Natural product reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
31 citing papers in PubMed.
- Integrated peptidogenomics decoding yak non-conventional peptides: functional mapping and biopotential mining of genetic resources.Animal bioscience · 2026Article
- LanthMS: A Computational Tool for the Structure Elucidation of Lanthipeptides from Tandem Mass Spectrometry Data.Protein and peptide letters · 2026Article
- HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search.Nature communications · 2023Article
- Large-scale discovery of non-conventional peptides in grape (Horticulture research · 2022Article
- Mining genomes to illuminate the specialized chemistry of life.Nature reviews. Genetics · 2021Review
- MassSpecBlocks: a web-based tool to create building blocks and sequences of nonribosomal peptides and polyketides for tandem mass spectra analysis.Journal of cheminformatics · 2021Article
- Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.Nature communications · 2021Article
- Review
- Coupling Mass Spectral and Genomic Information to Improve Bacterial Natural Product Discovery Workflows.Marine drugs · 2021Review
- Leveraging orthogonal mass spectrometry based strategies for comprehensive sequencing and characterization of ribosomal antimicrobial peptide natural products.Natural product reports · 2021Review
- Multiple Classes of Antimicrobial Peptides inJournal of natural products · 2021Article
- Marine Biodiscovery in a Changing World.Progress in the chemistry of organic natural products · 2021Article
- metaFlye: scalable long-read metagenome assembly using repeat graphs.Nature methods · 2020Article
- Reproducible molecular networking of untargeted mass spectrometry data using GNPS.Nature protocols · 2020Article
- Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain.The protein journal · 2020Article
- MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.Cell systems · 2019Article
- Article
- BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs.Genome research · 2019Article
- Microbial Diversity and Chemical Multiplicity of Culturable, Taxonomically Similar Bacterial Symbionts of the Leaf-Cutting Ant Acromyrmex coronatus.Microbial ecology · 2019Article
- Gene-guided discovery and engineering of branched cyclic peptides in plants.Proceedings of the National Academy of Sciences of the United States of America · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Covering: 2000 to 2015. While recent breakthroughs in the discovery of peptide antibiotics and other Peptidic Natural Products (PNPs) raise a challenge for developing new algorithms for their analyses, the computational technologies for high-throughput PNP discovery are still lacking. We discuss the computational bottlenecks in analyzing PNPs and review recent advances in genome mining, peptidogenomics, and spectral networks that are now enabling the discovery of new PNPs via mass spectrometry. We further describe the connections between these advances and the new generation of software tools for PNP dereplication, de novo sequencing, and identification.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.