Evidence map›Paper›PMID 26497129›Full record

ArticleBMC genomics2015

Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni.

Abiyad Baig, Alan McNally, Steven Dunn, Konrad H Paszkiewicz, Jukka Corander, Georgina Manning

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  5. Pathogenomics of EmergingClinical microbiology reviews · 2019
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  6. Characterization and Phylogenetic Analysis ofInternational journal of environmental research and public health · 2019
    Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Abiyad BaigSchool of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK. abiyad.baig@yahoo.com.
Alan McNallySchool of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK. alan.mcnally@ntu.ac.uk.
Steven DunnSchool of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK. steven.dunn2010@my.ntu.ac.uk.
Konrad H PaszkiewiczWellcome Trust Biomedical Informatics Hub, University of Exeter, Exeter, UK. K.h.paszkiewicz@exeter.ac.uk.
Jukka CoranderDepartment of Mathematics and Statistics, University of Helsinki, Helsinki, Finland. Jukka.corander@helsinki.fi.
Georgina ManningSchool of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK. georgina.manning@ntu.ac.uk.
Nottingham Trent University · GBStatistics Finland · FIUniversity of Exeter · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCampylobacter jejuni is a major zoonotic pathogen, causing gastroenteritis in humans. Invasion is an important pathogenesis trait by which C. jejuni causes disease. Here we report the genomic analysis of 134 strains to identify traits unique to hyperinvasive isolates.

methodsA total of 134 C. jejuni genomes were used to create a phylogenetic tree to position the hyperinvasive strains. Comparative genomics lead to the identification of mosaic capsule regions. A pan genome approach led to the discovery of unique loci, or loci with unique alleles, to the hyperinvasive strains.

resultsPhylogenetic analysis showed that the hyper-invasive phenotype is a generalist trait. Despite the fact that hyperinvasive strains are only distantly related based on the whole genome phylogeny, they all possess genes within the capsule region with high identity to capsule genes from C. jejuni subsp. doylei and C. lari. In addition there were genes unique to the hyper-invasive strains with identity to non-C. jejuni genes, as well as allelic variants of mainly pathogenesis related genes already known in the other C. jejuni. In particular, the sequence of flagella genes, flgD-E and flgL were highly conserved amongst the hyper-invasive strains and divergent from sequences in other C. jejuni. A novel cytolethal distending toxin (cdt) operon was also identified as present in all hyper-invasive strains in addition to the classic cdt operon present in other C. jejuni.

conclusionsOverall, the hyper-invasive phenotype is strongly linked to the presence of orthologous genes from other Campylobacter species in their genomes, notably within the capsule region, in addition to the observed association with unique allelic variants in flagellar genes and the secondary cdt operon which is unlikely under random sharing of accessory alleles in separate lineages.

Indexed as

AllelesGenome, BacterialGenomicsPhenotypeBacterial CapsulesCampylobacter InfectionsCampylobacter jejuniGene OrderGenes, BacterialHumansPhylogenyPolysaccharides, BacterialQuantitative Trait LociPolysaccharides, Bacterial

Identifiers

PMID26497129
PMCPMC4619573
OpenAlexW2151558818

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.