Evidence map›Paper›PMID 26496984›Full record

ArticleBMC genomics2015

Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite.

Zheng Wang, Dagmar H Leary, Jinny Liu, Robert E Settlage, Kenan P Fears, Stella H North, Anahita Mostaghim, Tara Essock-Burns, Sarah E Haynes, Kathryn J Wahl and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  8. Article
  9. Adhesion of acorn barnacles on surface-active borate glasses.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Zheng WangCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA. zheng.wang@nrl.navy.mil.
Dagmar H LearyCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA. dasha.leary@nrl.navy.mil.
Jinny LiuCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA. jinny.liu@nrl.navy.mil.
Robert E SettlageVirginia Bioinformatics Institute, 1015 Life Science Circle, Blacksburg, VA, 24061, USA. rsettlage@vbi.vt.edu.
Kenan P FearsChemistry Division, Naval Research Laboratory, Washington, DC, 20375, USA. kenan.fears@nrl.navy.mil.
Stella H NorthCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA. stella.north@nrl.navy.mil.
Anahita MostaghimCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA. mostagas@evms.edu.
Tara Essock-BurnsChemistry Division, Naval Research Laboratory, Washington, DC, 20375, USA. tara.essock-burns@duke.edu.
Sarah E HaynesChemistry Division, Naval Research Laboratory, Washington, DC, 20375, USA. hayse@umich.edu.
Kathryn J WahlChemistry Division, Naval Research Laboratory, Washington, DC, 20375, USA. kathryn.wahl@nrl.navy.mil.
Christopher M SpillmannCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, 20375, USA. christopher.spillmann@nrl.navy.mil.
Naval Research Laboratory Center for Bio/Molecular Science and EngineeringUnited States Naval Research Laboratory · USDuke University · USUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA complete understanding of barnacle adhesion remains elusive as the process occurs within and beneath the confines of a rigid calcified shell. Barnacle cement is mainly proteinaceous and several individual proteins have been identified in the hardened cement at the barnacle-substrate interface. Little is known about the molt- and tissue-specific expression of cement protein genes but could offer valuable insight into the complex multi-step processes of barnacle growth and adhesion.

methodsThe main body and sub-mantle tissue of the barnacle Amphibalanus amphitrite (basionym Balanus amphitrite) were collected in pre- and post-molt stages. RNA-seq technology was used to analyze the transcriptome for differential gene expression at these two stages and liquid chromatography-mass spectrometry/mass spectrometry (LC-MS/MS) was used to analyze the protein content of barnacle secretions.

resultsWe report on the transcriptomic analysis of barnacle cement gland tissue in pre- and post-molt growth stages and proteomic investigation of barnacle secretions. While no significant difference was found in the expression of cement proteins genes at pre- and post-molting stages, expression levels were highly elevated in the sub-mantle tissue (where the cement glands are located) compared to the main barnacle body. We report the discovery of a novel 114kD cement protein, which is identified in material secreted onto various surfaces by adult barnacles and with the encoding gene highly expressed in the sub-mantle tissue. Further differential gene expression analysis of the sub-mantle tissue samples reveals a limited number of genes highly expressed in pre-molt samples with a range of functions including cuticular development, biominerialization, and proteolytic activity.

conclusionsThe expression of cement protein genes appears to remain constant through the molt cycle and is largely confined to the sub-mantle tissue. Our results reveal a novel and potentially prominent protein to the mix of cement-related components in A. amphitrite. Despite the lack of a complete genome, sample collection allowed for extended transcriptomic analysis of pre- and post-molt barnacle samples and identified a number of highly-expressed genes. Our results highlight the complexities of this sessile marine organism as it grows via molt cycles and increases the area over which it exhibits robust adhesion to its substrate.

Indexed as

Gene Expression ProfilingTranscriptomeAnimalsComputational BiologyGene ExpressionGene Expression RegulationHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationMoltingProteinsThoracicaProteins

Identifiers

PMID26496984
PMCPMC4619306
OpenAlexW1900116913

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.