Evidence map›Paper›PMID 26496945›Full record

ArticleNucleic acids research2016

CstF-64 and 3'-UTR cis-element determine Star-PAP specificity for target mRNA selection by excluding PAPα.

Divya T Kandala, Nimmy Mohan, Vivekanand A, Sudheesh A P, Reshmi G, Rakesh S Laishram

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. The multitasking polyA tail: nuclear RNA maturation, degradation and export.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  8. Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  9. Review
  10. Article
  11. Review
  12. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Divya T KandalaCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum 695014, India.
Nimmy MohanCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum 695014, India.
Vivekanand ACancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum 695014, India.
Sudheesh A PCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum 695014, India.
Reshmi GCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum 695014, India.
Rakesh S LaishramCancer Research Program, Rajiv Gandhi Centre for Biotechnology, Trivandrum 695014, India laishram@rgcb.res.in.
Rajiv Gandhi Centre for Biotechnology · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/12/1/500508Wellcome Trust IA/I/1/505008
6 · The paper itself

Abstract

Almost all eukaryotic mRNAs have a poly (A) tail at the 3'-end. Canonical PAPs (PAPα/γ) polyadenylate nuclear pre-mRNAs. The recent identification of the non-canonical Star-PAP revealed specificity of nuclear PAPs for pre-mRNAs, yet the mechanism how Star-PAP selects mRNA targets is still elusive. Moreover, how Star-PAP target mRNAs having canonical AAUAAA signal are not regulated by PAPα is unclear. We investigate specificity mechanisms of Star-PAP that selects pre-mRNA targets for polyadenylation. Star-PAP assembles distinct 3'-end processing complex and controls pre-mRNAs independent of PAPα. We identified a Star-PAP recognition nucleotide motif and showed that suboptimal DSE on Star-PAP target pre-mRNA 3'-UTRs inhibit CstF-64 binding, thus preventing PAPα recruitment onto it. Altering 3'-UTR cis-elements on a Star-PAP target pre-mRNA can switch the regulatory PAP from Star-PAP to PAPα. Our results suggest a mechanism of poly (A) site selection that has potential implication on the regulation of alternative polyadenylation.

Indexed as

3' Untranslated RegionsApoptosis Regulatory ProteinsBinding SitesCell LineCleavage Stimulation FactorHumansMembrane ProteinsMitochondrial ProteinsMutationNAD(P)H Dehydrogenase (Quinone)Nucleotide MotifsNucleotidyltransferasesPoly APolynucleotide AdenylyltransferaseRegulatory Sequences, Nucleic AcidRNA-Binding Proteins3' Untranslated RegionsApoptosis Regulatory ProteinsBIK protein, humanCleavage Stimulation FactorCSTF2T protein, humanMembrane ProteinsMitochondrial ProteinsNAD(P)H Dehydrogenase (Quinone)NQO1 protein, humanNucleotidyltransferasesPoly APolynucleotide AdenylyltransferaseRNA-Binding ProteinsRNA, MessengerRNA PrecursorsTUT1 protein, human

Identifiers

PMID26496945
PMCPMC4737136
OpenAlexW1882377290

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.