Evidence map›Paper›PMID 26496699›Full record

ArticlePloS one2015

The Frequency of Cytidine Editing of Viral DNA Is Differentially Influenced by Vpx and Nucleosides during HIV-1 or SIVMAC Infection of Dendritic Cells.

Xuan-Nhi Nguyen, Véronique Barateau, Nannan Wu, Gregory Berger, Andrea Cimarelli

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. HIV-1 and HIV-2 exhibit divergent interactions with HLTF and UNG2 DNA repair proteins.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Xuan-Nhi NguyenCIRI, Centre International de Recherche en Infectiologie, Lyon, F69364, France; INSERM, U1111, 46 Allée d'Italie, Lyon, F69364, France; Ecole Normale Supérieure de Lyon, 46 Allée d'Italie, Lyon, F69364, France; CNRS, UMR5308, 46 Allée d'Italie, Lyon, F69364, France; University of Lyon, Lyon I, UMS3444/US8 BioSciences Gerland, Lyon, F69364, France.
Véronique BarateauCIRI, Centre International de Recherche en Infectiologie, Lyon, F69364, France; INSERM, U1111, 46 Allée d'Italie, Lyon, F69364, France; Ecole Normale Supérieure de Lyon, 46 Allée d'Italie, Lyon, F69364, France; CNRS, UMR5308, 46 Allée d'Italie, Lyon, F69364, France; University of Lyon, Lyon I, UMS3444/US8 BioSciences Gerland, Lyon, F69364, France.
Nannan WuCIRI, Centre International de Recherche en Infectiologie, Lyon, F69364, France; INSERM, U1111, 46 Allée d'Italie, Lyon, F69364, France; Ecole Normale Supérieure de Lyon, 46 Allée d'Italie, Lyon, F69364, France; CNRS, UMR5308, 46 Allée d'Italie, Lyon, F69364, France; University of Lyon, Lyon I, UMS3444/US8 BioSciences Gerland, Lyon, F69364, France; Institute of BioMedical Science (IBMS), East China Normal University (ECNU), Shanghai, China.
Gregory BergerCIRI, Centre International de Recherche en Infectiologie, Lyon, F69364, France; INSERM, U1111, 46 Allée d'Italie, Lyon, F69364, France; Ecole Normale Supérieure de Lyon, 46 Allée d'Italie, Lyon, F69364, France; CNRS, UMR5308, 46 Allée d'Italie, Lyon, F69364, France; University of Lyon, Lyon I, UMS3444/US8 BioSciences Gerland, Lyon, F69364, France.
Andrea CimarelliCIRI, Centre International de Recherche en Infectiologie, Lyon, F69364, France; INSERM, U1111, 46 Allée d'Italie, Lyon, F69364, France; Ecole Normale Supérieure de Lyon, 46 Allée d'Italie, Lyon, F69364, France; CNRS, UMR5308, 46 Allée d'Italie, Lyon, F69364, France; University of Lyon, Lyon I, UMS3444/US8 BioSciences Gerland, Lyon, F69364, France.
Université Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two cellular factors are currently known to modulate lentiviral infection specifically in myeloid cells: SAMHD1 and APOBEC3A (A3A). SAMHD1 is a deoxynucleoside triphosphohydrolase that interferes with viral infection mostly by limiting the intracellular concentrations of dNTPs, while A3A is a cytidine deaminase that has been described to edit incoming vDNA. The restrictive phenotype of myeloid cells can be alleviated through the direct degradation of SAMHD1 by the HIV-2/SIVSM Vpx protein or else, at least in the case of HIV-1, by the exogenous supplementation of nucleosides that artificially overcome the catabolic activity of SAMHD1 on dNTPs. Here, we have used Vpx and dNs to explore the relationship existing between vDNA cytidine deamination and SAMHD1 during HIV-1 or SIVMAC infection of primary dendritic cells. Our results reveal an interesting inverse correlation between conditions that promote efficient infection of DCs and the extent of vDNA editing that may reflect the different susceptibility of vDNA to cytoplasmic effectors during the infection of myeloid cells.

Indexed as

CytidineDendritic CellsDNA, ViralHEK293 CellsHeLa CellsHIV-1HumansKineticsNucleosidesReverse TranscriptionSimian Immunodeficiency VirusViral Regulatory and Accessory ProteinsCytidineDNA, ViralNucleosidesViral Regulatory and Accessory ProteinsVPX protein, Human immunodeficiency virus 2

Identifiers

PMID26496699
PMCPMC4619667
OpenAlexW2259991773

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.