Evidence map›Paper›PMID 26496604›Full record

ArticleCell2015

Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago.

Simon Rasmussen, Morten Erik Allentoft, Kasper Nielsen, Ludovic Orlando, Martin Sikora, Karl-Göran Sjögren, Anders Gorm Pedersen, Mikkel Schubert, Alex Van Dam, Christian Moliin Outzen Kapel and 21 more

Abstract readHistorical Article
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 194 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
194citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

194 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Rapid diagnostic tests for plague.The Cochrane database of systematic reviews · 2020
    Pooled it
  2. Ancient DNA and Human Physiology.Physiology (Bethesda, Md.) · 2026
    Review
  3. A Genetic Risk Variant Associated With the Risk of Primary Biliary Cholangitis Is Inherited From Neanderthals.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Article
  4. Article
  5. Article
  6. Abundance ofPathogens (Basel, Switzerland) · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Genetic Evidence ofGenes · 2025
    Article
  19. Article
  20. Article

134 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Simon RasmussenCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark.
Morten Erik AllentoftCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.
Kasper NielsenCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark.
Ludovic OrlandoCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.
Martin SikoraCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.
Karl-Göran SjögrenDepartment of Historical Studies, University of Gothenburg, 405 30 Gothenburg, Sweden.
Anders Gorm PedersenCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark.
Mikkel SchubertCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.
Alex Van DamCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark.
Christian Moliin Outzen KapelSection for Organismal Biology, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark.
Henrik Bjørn NielsenCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark.
Søren BrunakCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, 2200 Copenhagen, Denmark.
Pavel AvetisyanDivision of Armenology and Social Sciences, Institute of Archaeology and Ethnography, National Academy of Sciences, 0025 Yerevan, Republic of Armenia.
Andrey EpimakhovInstitute of History and Archaeology RAS (South Ural Department), South Ural State University, 454080 Chelyabinsk, Russia.
Mikhail Viktorovich KhalyapinOrenburg Museum of Fine Arts, 460000 Orenburg, Russia.
Artak GnuniDepartment of Archaeology and Ethnography, Yerevan State University, 0025 Yerevan, Republic of Armenia.
Aivar KriiskaDepartment of Archaeology, University of Tartu, 51003 Tartu, Estonia.
Irena LasakInstitute of Archaeology, University of Wrocław, 50-139 Wrocław, Poland.
Mait MetspaluDepartment of Evolutionary Biology, Estonian Biocentre and University of Tartu, 51010 Tartu, Estonia.
Vyacheslav MoiseyevPeter the Great Museum of Anthropology and Ethnography (Kunstkamera) RAS, 199034 St. Petersburg, Russia.
Andrei GromovPeter the Great Museum of Anthropology and Ethnography (Kunstkamera) RAS, 199034 St. Petersburg, Russia.
Dalia PokuttaDepartment of Historical Studies, University of Gothenburg, 405 30 Gothenburg, Sweden.
Lehti SaagDepartment of Evolutionary Biology, Estonian Biocentre and University of Tartu, 51010 Tartu, Estonia.
Liivi VarulDepartment of Archaeology, University of Tartu, 51003 Tartu, Estonia.
Levon YepiskoposyanLaboratory of Ethnogenomics, Institute of Molecular Biology, National Academy of Sciences, 0014 Yerevan, Armenia.
Thomas Sicheritz-PonténCenter for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kemitorvet, Building 208, 2800 Kongens Lyngby, Denmark.
Robert A FoleyLeverhulme Centre for Human Evolutionary Studies, Department of Archaeology and Anthropology, University of Cambridge, Cambridge CB2 1QH, UK.
Marta Mirazón LahrLeverhulme Centre for Human Evolutionary Studies, Department of Archaeology and Anthropology, University of Cambridge, Cambridge CB2 1QH, UK.
Rasmus NielsenCenter for Theoretical Evolutionary Genetics, University of California, Berkeley, California 94720-3140, USA.
Kristian KristiansenDepartment of Historical Studies, University of Gothenburg, 405 30 Gothenburg, Sweden.
Eske WillerslevCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark; Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK. Electronic address: ewillerslev@snm.ku.dk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacteria Yersinia pestis is the etiological agent of plague and has caused human pandemics with millions of deaths in historic times. How and when it originated remains contentious. Here, we report the oldest direct evidence of Yersinia pestis identified by ancient DNA in human teeth from Asia and Europe dating from 2,800 to 5,000 years ago. By sequencing the genomes, we find that these ancient plague strains are basal to all known Yersinia pestis. We find the origins of the Yersinia pestis lineage to be at least two times older than previous estimates. We also identify a temporal sequence of genetic changes that lead to increased virulence and the emergence of the bubonic plague. Our results show that plague infection was endemic in the human populations of Eurasia at least 3,000 years before any historical recordings of pandemics.

Indexed as

AnimalsAsiaDNA, BacterialEuropeHistory, AncientHistory, MedievalHumansPlagueSiphonapteraToothYersinia pestisDNA, Bacterial

Identifiers

PMID26496604
PMCPMC4644222

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.