Evidence map›Paper›PMID 26496460›Full record

ArticleJournal of cellular physiology2016

Coordinated Dynamics of RNA Splicing Speckles in the Nucleus.

Qiao Zhang, Krishna P Kota, Samer G Alam, Jeffrey A Nickerson, Richard B Dickinson, Tanmay P Lele

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In one paragraph

Article in Journal of cellular physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Qiao ZhangDepartment of Chemical Engineering, University of Florida, Gainesville, Florida.
Krishna P KotaDepartment of Cellular and Tissue Imaging, Perkin Elmer Inc., Waltham, Massachusetts.
Samer G AlamDepartment of Chemical Engineering, University of Florida, Gainesville, Florida.
Jeffrey A NickersonDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts.
Richard B DickinsonDepartment of Chemical Engineering, University of Florida, Gainesville, Florida.
Tanmay P LeleDepartment of Chemical Engineering, University of Florida, Gainesville, Florida.
University of Florida · USPerkinElmer (United States) · USUniversity of Massachusetts Chan Medical School · US

Funding

SUBNUCLEAR TARGETING OF TRANSCRIPTION FACTORSP01CA082834 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEIN, GARY S. · 2001 to 2015
$18.4M
SUBSTRATE RIGIDITY AND GENE EXPRESSION: Role of Nuclear TensionR01EB014869 · NIBIB · UNIVERSITY OF FLORIDA · PI LELE, TANMAY P. · 2012 to 2019
$3.4M
Cytoskeletal force generation on the nucleusR01GM102486 · NIGMS · UNIVERSITY OF FLORIDA · PI LELE, TANMAY P. · 2012 to 2015
$1.2M
NCI NIH HHS P01 CA082834NCI NIH HHS P01 CA82834NIBIB NIH HHS R01 EB014869NIGMS NIH HHS R01 GM102486
6 · The paper itself

Abstract

Despite being densely packed with chromatin, nuclear bodies and a nucleoskeletal network, the nucleus is a remarkably dynamic organelle. Chromatin loops form and relax, RNA transcripts and transcription factors move diffusively, and nuclear bodies move. We show here that RNA splicing speckled domains (splicing speckles) fluctuate in constrained nuclear volumes and remodel their shapes. Small speckles move in a directed way toward larger speckles with which they fuse. This directed movement is reduced upon decreasing cellular ATP levels or inhibiting RNA polymerase II activity. The random movement of speckles is reduced upon decreasing cellular ATP levels, moderately reduced after inhibition of SWI/SNF chromatin remodeling and modestly increased upon inhibiting RNA polymerase II activity. To define the paths through which speckles can translocate in the nucleus, we generated a pressure gradient to create flows in the nucleus. In response to the pressure gradient, speckles moved along curvilinear paths in the nucleus. Collectively, our results demonstrate a new type of ATP-dependent motion in the nucleus. We present a model where recycling splicing factors return as part of small sub-speckles from distal sites of RNA processing to larger splicing speckles by a directed ATP-driven mechanism through interchromatin spaces.

Indexed as

RNA SplicingRNA TransportAdenosine TriphosphateAntigens, NuclearCell LineCell NucleusEpithelial CellsFemaleGreen Fluorescent ProteinsHumansMammary Glands, HumanModels, BiologicalNuclear Matrix-Associated ProteinsPressureRNARNA-Binding ProteinsAdenosine TriphosphateAntigens, Nuclearenhanced green fluorescent proteinGreen Fluorescent ProteinsNuclear Matrix-Associated ProteinsRNARNA-Binding ProteinsRNA Polymerase IISRRM1 protein, human

Identifiers

PMID26496460
PMCPMC4755833
OpenAlexW1884870720

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.