Evidence map›Paper›PMID 26495996›Full record

ArticleThe ISME journal2016

Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica.

Stefanie P Glaeser, Jafargholi Imani, Ibrahim Alabid, Huijuan Guo, Neelendra Kumar, Peter Kämpfer, Martin Hardt, Jochen Blom, Alexander Goesmann, Michael Rothballer and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 96 citations in OpenAlex.

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  5. Birmingham-group IncP-1Microbial genomics · 2025
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  11. Article
  12. Article
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  14. Article
  15. Journal of fungi (Basel, Switzerland) · 2022
    Article
  16. Article
  17. Article
  18. Plant Growth-Promoting Ability of MycorrhizalFrontiers in microbiology · 2022
    Article
  19. Importance ofPathogens (Basel, Switzerland) · 2021
    Article
  20. Pathogens (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Stefanie P GlaeserInstitute of Applied Microbiology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig- University Giessen, Giessen, Germany.
Jafargholi ImaniInstitute of Phytopathology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig-University Giessen, Giessen, Germany.
Ibrahim AlabidInstitute of Phytopathology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig-University Giessen, Giessen, Germany.
Huijuan GuoInstitute of Phytopathology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig-University Giessen, Giessen, Germany.
Neelendra KumarInstitute of Phytopathology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig-University Giessen, Giessen, Germany.
Peter KämpferInstitute of Applied Microbiology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig- University Giessen, Giessen, Germany.
Martin HardtBiomedical Research Centre Seltersberg-Imaging Unit, Justus-Liebig-University Giessen, Giessen, Germany.
Jochen BlomBioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, Germany.
Alexander GoesmannBioinformatics and Systems Biology, Justus-Liebig-University Giessen, Giessen, Germany.
Michael RothballerResearch Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Anton HartmannResearch Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Karl-Heinz KogelInstitute of Phytopathology, Research Centre for BioSystems, Land Use and Nutrition, Justus-Liebig-University Giessen, Giessen, Germany.
University of Giessen · DEHelmholtz Zentrum München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Alphaproteobacterium Rhizobium radiobacter F4 (RrF4) was originally characterized as an endofungal bacterium in the beneficial endophytic Sebacinalean fungus Piriformospora indica. Although attempts to cure P. indica from RrF4 repeatedly failed, the bacterium can easily be grown in pure culture. Here, we report on RrF4's genome and the beneficial impact the free-living bacterium has on plants. In contrast to other endofungal bacteria, the genome size of RrF4 is not reduced. Instead, it shows a high degree of similarity to the plant pathogenic R. radiobacter (formerly: Agrobacterium tumefaciens) C58, except vibrant differences in both the tumor-inducing (pTi) and the accessor (pAt) plasmids, which can explain the loss of RrF4's pathogenicity. Similar to its fungal host, RrF4 colonizes plant roots without host preference and forms aggregates of attached cells and dense biofilms at the root surface of maturation zones. RrF4-colonized plants show increased biomass and enhanced resistance against bacterial leaf pathogens. Mutational analysis showed that, similar to P. indica, resistance mediated by RrF4 was dependent on the plant's jasmonate-based induced systemic resistance (ISR) pathway. Consistent with this, RrF4- and P. indica-induced pattern of defense gene expression were similar. In clear contrast to P. indica, but similar to plant growth-promoting rhizobacteria, RrF4 colonized not only the root outer cortex but also spread beyond the endodermis into the stele. On the basis of our findings, RrF4 is an efficient plant growth-promoting bacterium.

Indexed as

Agrobacterium tumefaciensArabidopsisBasidiomycotaCyclopentanesOxylipinsPlant ImmunityPlant LeavesPlant RootsSymbiosisCyclopentanesjasmonic acidOxylipins

Identifiers

PMID26495996
PMCPMC4796927
OpenAlexW2196858344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.