Evidence map›Paper›PMID 26494621›Full record

ArticleThe Journal of biological chemistry2015

The Protein Interaction of RNA Helicase B (RhlB) and Polynucleotide Phosphorylase (PNPase) Contributes to the Homeostatic Control of Cysteine in Escherichia coli.

Yi-Ting Tseng, Ni-Ting Chiou, Rajinikanth Gogiraju, Sue Lin-Chao

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Bacterial ribonucleases and their roles in RNA metabolism.Critical reviews in biochemistry and molecular biology · 2019
    Review
  6. Article
  7. Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Yi-Ting TsengFrom the Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan, the Institute of Molecular Medicine, College of Medicine, National Taiwan University, Taipei 10617, Taiwan.
Ni-Ting ChiouFrom the Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan, the Institute of Biochemistry & Molecular Biology, National Yang-Ming University, Taipei 11221, Taiwan.
Rajinikanth GogirajuFrom the Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan.
Sue Lin-ChaoFrom the Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan, mbsue@gate.sinica.edu.tw.
Institute of Molecular Biology, Academia Sinica · TWNational Taiwan University · TWNational Yang Ming Chiao Tung University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PNPase, one of the major enzymes with 3' to 5' single-stranded RNA degradation and processing activities, can interact with the RNA helicase RhlB independently of RNA degradosome formation in Escherichia coli. Here, we report that loss of interaction between RhlB and PNPase impacts cysteine homeostasis in E. coli. By random mutagenesis, we identified a mutant RhlB(P238L) that loses 75% of its ability to interact with PNPase but retains normal interaction with RNase E and RNA, in addition to exhibiting normal helicase activity. Applying microarray analyses to an E. coli strain with impaired RNA degradosome formation, we investigated the biological consequences of a weakened interaction between RhlB and PNPase. We found significant increases in 11 of 14 genes involved in cysteine biosynthesis. Subsequent Northern blot analyses showed that the up-regulated transcripts were the result of stabilization of the cysB transcript encoding a transcriptional activator for the cys operons. Furthermore, Northern blots of PNPase or RhlB mutants showed that RhlB-PNPase plays both a catalytic and structural role in regulating cysB degradation. Cells expressing the RhlB(P238L) mutant exhibited an increase in intracellular cysteine and an enhanced anti-oxidative response. Collectively, this study suggests a mechanism by which bacteria use the PNPase-RhlB exosome-like complex to combat oxidative stress by modulating cysB mRNA degradation.

Indexed as

HomeostasisAdenosine TriphosphateCysteineDEAD-box RNA HelicasesEscherichia coliEscherichia coli ProteinsPolyribonucleotide NucleotidyltransferaseProtein BindingAdenosine TriphosphateCysteineDEAD-box RNA HelicasesEscherichia coli ProteinsPolyribonucleotide NucleotidyltransferaseRhlB protein, E colibacterial metabolismCysteine homeostasisEscherichia coli (E. coli)exosome complexoxidative stressPNPaseRhlBribonucleaseRNA degradation

Identifiers

PMID26494621
PMCPMC4705995
OpenAlexW2181098546

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.