Evidence map›Paper›PMID 26494264›Full record

ArticleAnalytical chemistry2015

Photolithographic Synthesis of High-Density DNA and RNA Arrays on Flexible, Transparent, and Easily Subdivided Plastic Substrates.

Matthew T Holden, Matthew C D Carter, Cheng-Hsien Wu, Jamison Wolfer, Eric Codner, Michael R Sussman, David M Lynn, Lloyd M Smith

Abstract read
In one paragraph

Article in Analytical chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Spotting, Transcription andComputational and structural biotechnology journal · 2019
    Review
  8. High-Density RNA Microarrays Synthesized In Situ by Photolithography.Angewandte Chemie (International ed. in English) · 2018
    Article
  9. Article
  10. Parallel DNA Synthesis on Poly(ethylene terephthalate).Chembiochem : a European journal of chemical biology · 2017
    Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Matthew T HoldenDepartment of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States .
Matthew C D CarterDepartment of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States .
Cheng-Hsien WuDepartment of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States .
Jamison WolferBiotechnology Center, University of Wisconsin , Madison, Wisconsin 53706, United States .
Eric CodnerDepartment of Chemical and Biological Engineering, University of Wisconsin , Madison, Wisconsin 53706, United States.
Michael R SussmanBiotechnology Center, University of Wisconsin , Madison, Wisconsin 53706, United States .
David M LynnDepartment of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States .
Lloyd M SmithDepartment of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States .
University of Wisconsin–Madison · USEnergy Center of Wisconsin · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
Functional characterization of regulatory sequence variants in complex diseasesR01GM109099 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI OLIVIER, MICHAEL · 2014 to 2017
$2.6M
Development and Applications of High Density RNA ArraysR01GM108727 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SMITH, LLOYD M · 2014 to 2017
$1.1M
NIGMS NIH HHS 1R01GM108727NIGMS NIH HHS 1R01GM109099NIGMS NIH HHS 5T32GM08349NIGMS NIH HHS R01 GM108727NIGMS NIH HHS R01 GM109099NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

The photolithographic fabrication of high-density DNA and RNA arrays on flexible and transparent plastic substrates is reported. The substrates are thin sheets of poly(ethylene terephthalate) (PET) coated with cross-linked polymer multilayers that present hydroxyl groups suitable for conventional phosphoramidite-based nucleic acid synthesis. We demonstrate that by modifying array synthesis procedures to accommodate the physical and chemical properties of these materials, it is possible to synthesize plastic-backed oligonucleotide arrays with feature sizes as small as 14 μm × 14 μm and feature densities in excess of 125 000/cm(2), similar to specifications attainable using rigid substrates such as glass or glassy carbon. These plastic-backed arrays are tolerant to a wide range of hybridization temperatures, and improved synthetic procedures are described that enable the fabrication of arrays with sequences up to 50 nucleotides in length. These arrays hybridize with S/N ratios comparable to those fabricated on otherwise identical arrays prepared on glass or glassy carbon. This platform supports the enzymatic synthesis of RNA arrays and proof-of-concept experiments are presented showing that the arrays can be readily subdivided into smaller arrays (or "millichips") using common laboratory-scale laser cutting tools. These results expand the utility of oligonucleotide arrays fabricated on plastic substrates and open the door to new applications for these important bioanalytical tools.

Indexed as

DNARNAMolecular StructureOligonucleotide Array Sequence AnalysisPhotochemical ProcessesPlasticsPolyethylene TerephthalatesDNAPlasticsPolyethylene TerephthalatesRNA

Identifiers

PMID26494264
PMCPMC4945104
OpenAlexW2181095475

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.