Evidence map›Paper›PMID 26494017›Full record

ArticleJournal of the American Chemical Society2015

New Antibiotic Candidates against Helicobacter pylori.

Shanzhi Wang, Scott A Cameron, Keith Clinch, Gary B Evans, Zhimeng Wu, Vern L Schramm, Peter C Tyler

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. MAT Gain of Activity Mutation inACS infectious diseases · 2023
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  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Antibacterial Strategy againstACS medicinal chemistry letters · 2019
    Article
  13. Review
  14. Review
  15. Article
  16. Immucillins in Infectious Diseases.ACS infectious diseases · 2018
    Review
  17. Novel essential amino acid-sulfanilamide hybrid as safe anti-ulcerogenic agent with anti-Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Shanzhi WangDepartment of Biochemistry, Albert Einstein College of Medicine , New York, New York, 10461, United States.
Scott A CameronDepartment of Biochemistry, Albert Einstein College of Medicine , New York, New York, 10461, United States.
Keith ClinchThe Ferrier Research Institute, Victoria University of Wellington , Lower Hutt, Wellington 5040, New Zealand.
Gary B EvansThe Ferrier Research Institute, Victoria University of Wellington , Lower Hutt, Wellington 5040, New Zealand.
Zhimeng WuThe Ferrier Research Institute, Victoria University of Wellington , Lower Hutt, Wellington 5040, New Zealand.
Vern L SchrammDepartment of Biochemistry, Albert Einstein College of Medicine , New York, New York, 10461, United States.
Peter C TylerThe Ferrier Research Institute, Victoria University of Wellington , Lower Hutt, Wellington 5040, New Zealand.
Victoria University of Wellington · NZAlbert Einstein College of Medicine · US

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MARIUZZA, ROY A · 1998 to 2011
$32.2M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR01GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1989 to 2023
$10.0M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR37GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1998 to 2007
$3.5M
NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIGMS NIH HHS GM041916NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS R01 GM041916NIGMS NIH HHS R37 GM041916
6 · The paper itself

Abstract

Helicobacter pylori is a Gram-negative bacterium that colonizes the gut of over 50% of the world's population. It is responsible for most peptic ulcers and is an important risk factor for gastric cancer. Antibiotic treatment for H. pylori infections is challenging as drug resistance has developed to antibiotics with traditional mechanisms of action. H. pylori uses an unusual pathway for menaquinone biosynthesis with 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (MTAN) catalyzing an essential step. We validated MTAN as a target with a transition-state analogue of the enzyme [Wang, S.; Haapalainen, A. M.; Yan, F.; et al. Biochemistry 2012, 51, 6892-6894]. MTAN inhibitors will only be useful drug candidates if they can both include tight binding to the MTAN target and have the ability to penetrate the complex cell membrane found in Gram-negative H. pylori. Here we explore structural scaffolds for MTAN inhibition and for growth inhibition of cultured H. pylori. Sixteen analogues reported here are transition-state analogues of H. pylori MTAN with dissociation constants of 50 pM or below. Ten of these prevent growth of the H. pylori with IC90 values below 0.01 μg/mL. These remarkable compounds meet the criteria for potent inhibition and cell penetration. As a consequence, 10 new H. pylori antibiotic candidates are identified, all of which prevent H. pylori growth at concentrations 16-2000-fold lower than the five antibiotics, amoxicillin, metronidazole, levofloxacin, tetracyclin, and clarithromycin, commonly used to treat H. pylori infections. X-ray crystal structures of MTAN cocrystallized with several inhibitors show them to bind in the active site making interactions consistent with transition-state analogues.

Indexed as

Anti-Bacterial AgentsDose-Response Relationship, DrugHelicobacter pyloriMicrobial Sensitivity TestsModels, MolecularStructure-Activity RelationshipAnti-Bacterial Agents

Identifiers

PMID26494017
PMCPMC6709534
OpenAlexW2122441538

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.