Evidence map›Paper›PMID 26494007›Full record

ArticleBMC microbiology2015

Molecular study on the carAB operon reveals that carB gene is required for swimming and biofilm formation in Xanthomonas citri subsp. citri.

Tao Zhuo, Wei Rou, Xue Song, Jing Guo, Xiaojing Fan, Gicharu Gibson Kamau, Huasong Zou

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

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  13. ThePathogens (Basel, Switzerland) · 2021
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  14. Hydrogen Peroxide Affects Growth ofFrontiers in immunology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Tao ZhuoCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. 000q814035@fafu.edu.cn.
Wei RouCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. 1540534615@qq.com.
Xue SongHebei Institute of Engineering Technology, Shijiazhuang, 050091, China. songxue86@gamil.com.
Jing GuoSchool of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China. gjyeah2012@sjtu.edu.cn.
Xiaojing FanCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. 752407929@qq.com.
Gicharu Gibson KamauCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. gicharukamau@yahoo.com.
Huasong ZouCollege of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. hszou@fafu.edu.cn.
Fujian Agriculture and Forestry University · CNHebei University of Science and Technology · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe carA and carB genes code the small and large subunits of carbamoyl-phosphate synthase (CPS) that responsible for arginine and pyrimidine production. The purpose of this work was to study the gene organization and expression pattern of carAB operon, and the biological functions of carA and carB genes in Xanthomonas citri subsp. citri.

methodsRT-PCR method was employed to identify the full length of carAB operon transcript in X. citri subsp. citri. The promoter of carAB operon was predicted and analyzed its activity by fusing a GUS reporter gene. The swimming motility was tested on 0.25% agar NY plates with 1% glucose. Biofilm was measured by cell adhesion to polyvinyl chloride 96-well plate.

resultsThe results indicated that carAB operon was composed of five gene members carA-orf-carB-greA-rpfE. A single promoter was predicted from the nucleotide sequence upstream of carAB operon, and its sensitivity to glutamic acid, uracil and arginine was confirmed by fusing a GUS reporter gene. Deletion mutagenesis of carB gene resulted in reduced abilities in swimming on soft solid media and in forming biofilm on polystyrene microtiter plates.

conclusionsFrom these results, we concluded that carAB operon was involved in multiple biological processes in X. citri subsp. citri.

Indexed as

LocomotionOperonBiofilmsCarbamoyl-Phosphate Synthase (Ammonia)DNA Mutational AnalysisGene Expression ProfilingGene OrderGenes, BacterialGenes, ReporterGlucuronidasePromoter Regions, GeneticSequence DeletionTranscription, GeneticXanthomonasCarbamoyl-Phosphate Synthase (Ammonia)Glucuronidase

Identifiers

PMID26494007
PMCPMC4619228
OpenAlexW2141338383

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.