Evidence map›Paper›PMID 26493707›Full record

ArticleBMC genomics2015

Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat.

Zhi Zheng, Jian Ma, Jiri Stiller, Qiang Zhao, Qi Feng, Frédéric Choulet, Catherine Feuillet, You-Liang Zheng, Yuming Wei, Bin Han and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
7.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  5. Article
  6. Fine mapping of a major QTL, qKl-1BL controlling kernel length in common wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  7. A novel QTL conferring Fusarium crown rot resistance on chromosome 2A in a wheat EMS mutant.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  8. Genome-wide association analysis of Fusarium crown rot resistance in Chinese wheat landraces.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
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  15. Review
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  17. Article
  18. Identification of a novel genomic region associated with resistance to Fusarium crown rot in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 4 countries.

Zhi ZhengCSIRO Agriculture, 306 Carmody Road, St Lucia, QLD, 4067, Australia. zhengzhi1103@aliyun.com.
Jian MaCSIRO Agriculture, 306 Carmody Road, St Lucia, QLD, 4067, Australia. plantgbmj@hotmail.com.
Jiri StillerCSIRO Agriculture, 306 Carmody Road, St Lucia, QLD, 4067, Australia. jiri.stiller@csiro.au.
Qiang ZhaoNational Center for Gene Research, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 500 Caobao Road, Shanghai, 200233, China. zqiang@ncgr.ac.cn.
Qi FengNational Center for Gene Research, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 500 Caobao Road, Shanghai, 200233, China. qfeng@ncgr.ac.cn.
Frédéric ChouletINRA-UBP Joint Research Unit 1095, Genetics, Diversity and Ecophysiology of Cereals Clermont-Ferrand, Clermont-Ferrand, F-63100, France. frederic.choulet@clermont.inra.fr.
Catherine FeuilletINRA-UBP Joint Research Unit 1095, Genetics, Diversity and Ecophysiology of Cereals Clermont-Ferrand, Clermont-Ferrand, F-63100, France. catherine.feuillet@bayer.com.
You-Liang ZhengTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, China. ylzheng@sicau.edu.cn.
Yuming WeiTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, China. ymwei@sicau.edu.cn.
Bin HanNational Center for Gene Research, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 500 Caobao Road, Shanghai, 200233, China. bhan@ncgr.ac.cn.
Guijun YanNational Foxtail Millet Improvement Centre, Institute of Millet Crops, Hebei Academy of Agricultural and Forestry Sciences, Shijiazhuang, China. guijun.yan@uwa.edu.au.
John M MannersCSIRO Agriculture, 306 Carmody Road, St Lucia, QLD, 4067, Australia. john.manners@csiro.au.
Chunji LiuCSIRO Agriculture, 306 Carmody Road, St Lucia, QLD, 4067, Australia. chunji.liu@csiro.au.
Commonwealth Scientific and Industrial Research Organisation · AUInstitute for Biological Sciences · CASichuan Agricultural University · CNUniversité Clermont Auvergne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFusarium crown rot (FCR) is a major cereal disease in semi-arid areas worldwide. Of the various QTL reported, the one on chromosome arm 3BL (Qcrs.cpi-3B) has the largest effect that can be consistently detected in different genetic backgrounds. Nine sets of near isogenic lines (NILs) for this locus were made available in a previous study. To identify markers that could be reliably used in tagging the Qcrs.cpi-3B locus, a NIL-derived population consisting of 774 F10 lines were generated and exploited to assess markers selected from the existing linkage map and generated from sequences of the 3B pseudomolecule.

resultsThis is the first report on fine mapping a QTL conferring FCR resistance in wheat. By three rounds of linkage mapping using the NILs and the NIL-derived population, the Qcrs.cpi-3B locus was mapped to an interval of 0.7 cM covering a physical distance of about 1.5 Mb. Seven markers co-segregating with the locus were developed. This interval contains a total of 63 gene-coding sequences based on the 3B pseudomolecule, and six of them were known to encode disease resistance proteins. Several of the genes in this interval were among those responsive to FCR infection detected in an earlier study.

conclusionsThe accurate localization of the Qcrs.cpi-3B locus and the development of the markers co-segregating with it should facilitate the incorporation of this large-effect QTL conferring FCR resistance into breeding programs as well as the cloning of the gene(s) underlying the QTL.

Indexed as

Chromosome MappingChromosomes, PlantDisease ResistanceFusariumPlant DiseasesQuantitative Trait LociTriticum

Identifiers

PMID26493707
PMCPMC4618961
OpenAlexW1826326021

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.